Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.8e-207 725.7 372 100.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.1e-194 681.0 370 93.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 8.9e-191 670.2 374 92.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.8e-190 667.5 374 92.0
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.7e-189 666.0 377 91.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.2e-187 659.8 372 90.3
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 6.0e-187 657.5 387 87.6
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.8e-184 647.9 370 90.3
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-171 606.7 346 91.0
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 8.1e-168 594.0 371 81.4
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.1e-164 583.6 382 80.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 4.2e-164 581.6 380 80.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.7e-163 578.9 382 80.1
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.6e-163 578.2 381 80.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.6e-163 578.2 380 80.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.3e-161 571.6 381 80.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.6e-161 570.5 357 82.9
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 4.8e-160 568.2 381 79.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.8e-160 568.2 358 82.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.1e-159 565.1 358 81.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 5.3e-159 564.7 348 84.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 6.9e-159 564.3 372 80.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 6.9e-159 564.3 358 81.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.6e-158 562.4 359 80.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.4e-158 562.0 354 82.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.4e-158 562.0 348 83.0
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 5.9e-158 561.2 379 77.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 7.6e-158 560.8 378 78.6
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 7.6e-158 560.8 361 80.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.3e-157 560.1 361 82.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.8e-157 558.5 361 80.3
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.5e-157 557.8 376 77.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-156 557.0 353 81.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.1e-156 557.0 357 81.5
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-156 556.2 380 76.8
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-156 556.2 380 76.8
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.9e-156 556.2 352 81.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.9e-156 556.2 352 81.0
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.2e-156 555.1 349 82.5
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 9.3e-156 553.9 380 76.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 9.3e-156 553.9 380 76.1
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.2e-155 553.5 359 81.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-155 552.7 380 76.8
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.1e-155 552.7 344 82.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.6e-155 552.0 375 78.1
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 3.6e-155 552.0 326 86.5
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 6.1e-155 551.2 367 78.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.1e-155 551.2 357 79.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 7.9e-155 550.8 380 76.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 7.9e-155 550.8 344 82.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.0e-154 550.4 380 75.8
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.8e-154 549.7 380 75.8
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.8e-154 549.7 380 76.3
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.0e-154 548.9 380 77.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.9e-154 548.5 353 79.9
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 5.1e-154 548.1 380 75.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 6.7e-154 547.7 347 82.1
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-153 547.0 350 81.4
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.5e-153 545.8 349 82.5
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.5e-153 545.8 355 80.6
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.3e-153 545.4 381 75.9
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-153 545.4 357 78.7
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 5.7e-153 544.7 350 81.1
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.7e-153 544.7 342 81.9
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.2e-152 542.7 381 75.6
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.8e-152 542.3 325 84.9
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.7e-152 542.0 332 83.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.8e-152 541.6 344 80.2
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 6.3e-152 541.2 376 76.6
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 6.3e-152 541.2 376 76.6
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-151 540.4 381 75.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-151 540.0 326 85.0
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.4e-151 540.0 354 79.7
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-151 539.7 350 80.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.8e-151 539.7 350 80.6
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.4e-151 539.3 342 81.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 5.3e-151 538.1 352 79.3
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 5.3e-151 538.1 319 84.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.2e-150 537.0 322 85.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.6e-150 535.8 330 82.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.6e-150 535.8 343 79.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.4e-150 535.4 336 81.8
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 4.5e-150 535.0 352 78.4
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.9e-150 534.6 348 78.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.3e-149 533.5 358 77.1
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.7e-149 533.1 375 75.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-149 532.7 321 84.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.4e-148 530.0 376 74.5
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.4e-148 530.0 299 89.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-148 529.3 338 80.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 5.5e-148 528.1 332 80.7
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 5.5e-148 528.1 332 80.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 7.2e-148 527.7 339 79.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.2e-148 527.7 339 79.9
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.2e-147 526.9 371 76.3
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.6e-147 526.6 357 76.8
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.6e-147 526.6 332 80.4
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.6e-147 526.6 359 77.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.6e-147 526.6 332 80.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.1e-147 526.2 332 81.0
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.6e-147 525.4 372 74.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 3.6e-147 525.4 333 79.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.6e-147 525.4 335 81.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.6e-147 525.4 347 78.4
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 3.6e-147 525.4 383 73.4
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.9e-147 524.2 351 76.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.4e-146 523.5 325 82.5
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.0e-146 522.3 332 80.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.9e-146 521.9 350 76.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.9e-146 521.9 285 93.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 8.8e-146 520.8 299 87.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.0e-145 519.6 336 79.8
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.0e-145 519.6 352 76.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.3e-145 518.8 315 83.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.8e-144 515.8 319 81.5
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.7e-144 515.4 351 75.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 6.3e-144 514.6 313 83.7
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 6.3e-144 514.6 356 73.9
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.2e-144 514.2 333 80.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.2e-144 514.2 333 80.5
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.4e-143 513.5 358 74.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.4e-143 513.5 356 73.6
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-143 513.1 380 72.6
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.4e-143 512.7 352 75.0
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-143 512.3 300 85.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 9.1e-143 510.8 366 74.0
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-142 510.4 346 78.0
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.6e-142 509.2 285 89.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.4e-142 508.8 343 76.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 8.5e-141 504.2 355 76.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 3.2e-140 502.3 426 64.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.6e-139 500.0 343 75.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.9e-139 497.7 316 80.4
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.7e-136 490.0 381 70.1
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-136 489.6 325 77.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.1e-135 485.7 331 74.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.0e-133 480.7 336 73.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.3e-133 480.3 314 78.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.9e-133 479.2 315 76.8
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.8e-133 478.8 315 77.1
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-132 477.2 368 68.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 9.4e-132 474.2 280 85.7
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.0e-130 469.2 300 79.0
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.6e-129 466.1 321 73.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 3.3e-129 465.7 299 78.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.5e-129 464.5 328 75.9
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.2e-128 463.0 310 73.9
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.0e-114 417.5 321 68.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.7e-109 400.2 263 79.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.3e-109 399.8 327 63.6
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 8.6e-109 397.9 317 70.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.6e-102 377.1 259 78.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.6e-99 367.1 291 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.9e-93 345.9 229 79.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.1e-75 287.0 266 60.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 6.0e-70 268.9 167 84.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 8.7e-69 265.0 186 75.3
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.3e-67 261.2 309 50.2
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-61 241.1 168 72.0
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.9e-47 194.1 113 87.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 7.9e-46 188.7 112 80.4
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.2e-41 174.9 227 51.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.4e-41 173.3 173 60.7
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.4e-41 173.3 173 60.7
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.0e-33 147.5 338 33.4
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.9e-33 146.0 99 75.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.9e-33 146.0 101 73.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.9e-33 146.0 99 75.8
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.8e-32 143.3 99 74.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 5.0e-32 142.9 98 74.5
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 5.5e-31 139.4 103 70.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 5.1e-29 132.9 104 65.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.4e-28 129.8 103 66.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.1e-18 97.1 62 77.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.5e-17 93.6 67 77.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.5e-17 93.2 49 93.9
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.1e-15 88.6 61 77.0
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.2e-08 64.3 35 82.9
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.5e-07 60.8 35 80.0


User provided reference genes

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