Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 8.4e-172 607.1 338 100.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.6e-165 585.5 338 96.7
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 2.6e-165 585.5 338 96.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.8e-164 581.6 338 96.2
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.3e-161 572.4 350 93.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.5e-160 569.7 338 93.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.3e-160 568.5 338 93.8
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.3e-159 566.6 338 93.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.3e-159 566.6 338 92.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.7e-159 566.2 338 94.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.3e-159 564.3 338 92.3
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.1e-158 563.5 338 92.9
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.4e-158 562.4 338 93.8
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.1e-158 561.6 338 92.6
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 5.3e-158 561.2 338 93.2
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.2e-157 560.1 338 92.0
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.0e-157 559.3 338 92.9
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.0e-157 559.3 338 91.4
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 2.6e-157 558.9 338 92.6
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 3.4e-157 558.5 338 91.7
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 7.7e-157 557.4 338 92.0
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.0e-156 557.0 338 90.8
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.7e-156 556.2 338 89.9
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 6.5e-156 554.3 338 87.6
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.5e-155 552.4 338 90.2
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.2e-154 550.1 339 91.2
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.2e-154 550.1 339 91.2
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 2.7e-154 548.9 354 88.7
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.7e-154 548.9 338 90.8
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.6e-154 548.5 338 90.8
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 7.9e-154 547.4 338 91.4
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.0e-153 547.0 338 90.5
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.8e-153 546.2 338 90.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 89.6
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 89.6
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 8.8e-153 543.9 338 89.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.5e-152 543.1 338 91.7
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.3e-152 542.0 338 89.9
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 4.4e-152 541.6 338 90.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 7.4e-152 540.8 341 89.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 7.4e-152 540.8 338 87.6
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.3e-151 540.0 338 90.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.2e-151 539.3 338 89.6
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.1e-150 537.0 338 89.1
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-150 536.6 338 88.2
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 3.1e-150 535.4 340 90.0
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 7.0e-150 534.3 338 88.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.6e-149 533.1 365 83.8
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.6e-149 533.1 338 88.8
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.6e-149 533.1 338 88.8
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.0e-149 532.7 373 83.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.0e-149 532.7 339 87.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.5e-149 531.9 339 85.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.5e-149 531.9 338 88.5
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.5e-149 531.9 338 88.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.9e-149 531.2 339 85.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 5.9e-149 531.2 340 88.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.7e-149 530.8 338 82.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 339 87.0
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.0e-148 530.4 340 89.4
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.2e-148 529.3 338 87.6
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 6.5e-148 527.7 339 84.7
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 8.5e-148 527.3 356 84.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 8.5e-148 527.3 356 84.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 87.0
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.5e-147 526.6 339 86.7
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.9e-147 526.2 339 87.9
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.2e-147 525.0 331 90.6
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.2e-146 523.5 338 88.2
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.6e-146 523.1 339 86.4
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.1e-146 522.7 322 90.4
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 4.7e-146 521.5 339 86.1
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 4.7e-146 521.5 338 87.6
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.4e-145 520.0 338 86.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 6.7e-145 517.7 346 85.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 8.8e-145 517.3 359 83.6
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.5e-144 516.5 338 87.3
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.8e-143 512.3 338 83.4
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 3.7e-143 511.9 331 87.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 6.3e-143 511.1 352 83.2
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.3e-142 508.1 340 82.6
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-141 506.5 349 83.7
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.6e-141 506.5 338 85.2
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.0e-141 506.1 338 86.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.9e-141 504.6 338 87.0
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.0e-140 503.8 322 89.1
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.7e-140 503.1 339 83.5
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.7e-140 503.1 339 83.5
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 79.6
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 84.6
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 6.5e-140 501.1 378 78.0
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 6.5e-140 501.1 322 88.8
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.5e-139 500.0 333 85.9
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 5.5e-139 498.0 349 82.2
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 7.2e-139 497.7 338 83.7
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-138 496.9 338 86.1
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.7e-138 495.7 350 82.6
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.5e-136 490.0 327 86.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.5e-136 490.0 327 86.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.0e-136 489.6 368 77.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 3.1e-134 482.3 338 80.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.1e-134 482.3 366 79.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.1e-134 482.3 366 79.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.6e-133 479.9 338 75.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.5e-131 471.5 306 89.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.8e-129 466.5 338 79.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.1e-126 455.7 334 82.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-124 450.7 339 78.5
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 6.1e-122 441.4 275 94.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.0e-121 439.1 353 73.7
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.0e-121 438.7 284 87.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.9e-115 419.9 517 54.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.2e-113 411.8 322 79.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.4e-112 409.1 224 89.7
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.2e-110 402.5 340 75.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.5e-107 393.7 256 91.4
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 3.1e-105 386.0 321 76.3
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.3e-99 365.9 277 78.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-96 357.5 338 67.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 9.2e-94 347.8 338 66.3
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.2e-89 332.0 381 49.6
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 3.3e-83 312.8 331 54.7
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 4.8e-82 308.9 147 98.6
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 6.0e-69 265.4 183 73.8
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 3.9e-68 262.7 212 80.7
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 3.5e-61 239.6 327 46.8
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.2e-53 214.5 116 87.1
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.6e-45 187.6 166 68.7
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.4e-41 174.5 91 95.6
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-38 164.5 90 97.8
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.9e-36 156.4 90 91.1
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.5e-22 111.3 64 93.8
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 4.1e-17 93.2 201 28.4
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.2e-16 91.7 266 30.1
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.6e-13 80.1 86 76.7
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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