Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 3.9e-65 251.1 113 100.0
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 6.3e-55 217.2 113 85.8
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-54 216.1 113 85.0
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.8e-54 215.7 113 85.0
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.8e-54 215.7 113 85.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.1e-54 214.9 113 85.0
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 4.1e-54 214.5 113 85.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 3.5e-53 211.5 113 82.3
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.7e-53 210.3 113 83.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 5.0e-44 181.0 115 69.6
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 6.5e-44 180.6 115 72.2
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 6.5e-44 180.6 115 70.4
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.9e-43 179.1 115 71.3
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.9e-43 179.1 115 71.3
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.2e-43 178.3 115 70.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 5.5e-43 177.6 115 71.3
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.2e-42 176.4 115 70.4
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.8e-41 172.6 115 68.7
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 3.0e-41 171.8 115 67.8
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 6.8e-41 170.6 115 68.7
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 6.8e-41 170.6 115 68.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.4e-40 167.9 115 66.1
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 4.4e-40 167.9 115 66.1
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 9.8e-40 166.8 115 67.8
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 115 63.5
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 115 63.5
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 115 63.5
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 115 63.5
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 2.2e-39 165.6 113 66.4
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 8.3e-39 163.7 113 64.6
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.2e-37 159.8 115 63.5
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.6e-37 159.5 113 63.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.6e-37 159.5 115 64.3
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 3.5e-37 158.3 113 60.2
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 5.9e-37 157.5 115 64.3
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 5.9e-37 157.5 115 64.3
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 5.9e-37 157.5 113 61.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.3e-36 156.4 115 63.5
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.7e-36 156.0 113 60.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.7e-36 156.0 100 71.0
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 2.2e-36 155.6 115 62.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.9e-35 152.5 115 58.3
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.5e-35 152.1 113 59.3
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 4.2e-35 151.4 113 58.4
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 9.5e-35 150.2 113 59.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.6e-34 149.4 115 59.1
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 3.6e-34 148.3 115 59.1
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 6.1e-34 147.5 115 59.1
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 6.1e-34 147.5 115 59.1
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 8.0e-34 147.1 98 71.4
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 8.0e-34 147.1 115 57.4
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.8e-33 146.0 113 57.5
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 2.3e-33 145.6 113 58.4
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 3.0e-33 145.2 115 59.1
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 3.0e-33 145.2 115 59.1
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 6.8e-33 144.1 115 57.4
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.3e-31 139.8 102 58.8
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.7e-31 139.4 113 52.2
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.7e-31 138.3 115 54.8
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 8.3e-31 137.1 113 57.5
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.1e-30 136.7 113 54.0
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.8e-30 136.0 113 55.8
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 53.1
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 53.1
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 53.1
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.6e-29 132.9 113 56.6
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.0e-29 132.5 111 57.7
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 2.7e-29 132.1 113 55.8
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 3.5e-29 131.7 113 55.8
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 7.8e-29 130.6 113 54.0
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.0e-28 130.2 113 55.8
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.0e-28 130.2 115 53.9
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.3e-28 129.8 85 68.2
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 2.3e-28 129.0 113 52.2
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 2.9e-28 128.6 113 52.2
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 6.6e-28 127.5 113 53.1
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.1e-27 126.7 115 52.2
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.5e-27 126.3 113 53.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.9e-27 125.9 113 51.3
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.9e-27 125.9 104 54.8
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 2.5e-27 125.6 115 53.0
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 3.3e-27 125.2 111 54.1
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 4.3e-27 124.8 113 54.0
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 5.6e-27 124.4 114 50.9
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 7.3e-27 124.0 113 51.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.2e-26 123.2 115 52.2
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 2.1e-26 122.5 113 53.1
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 4.7e-26 121.3 118 47.5
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 8.0e-26 120.6 113 51.3
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.0e-25 120.2 115 53.9
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.4e-25 119.8 111 51.4
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.4e-25 119.8 117 47.9
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 1.8e-25 119.4 111 52.3
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 5.2e-25 117.9 69 72.5
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.5e-24 116.3 115 50.4
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.6e-24 115.5 115 52.2
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 5.7e-24 114.4 115 49.6
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 1.3e-23 113.2 115 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 4.9e-23 111.3 113 48.7
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 8.3e-23 110.5 89 52.8
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.1e-22 110.2 109 45.0
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.1e-22 110.2 139 43.2
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.2e-21 106.7 78 66.7
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 2.3e-20 102.4 113 46.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.9e-19 99.4 73 64.4
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.5e-19 99.0 79 64.6
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 9.5e-19 97.1 62 58.1
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 9.5e-19 97.1 115 45.2
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.1e-18 95.9 111 40.5
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 4.0e-17 91.7 100 45.0
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 5.2e-17 91.3 55 65.5
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.4e-14 83.2 62 58.1
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 1.2e-13 80.1 76 50.0
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.2e-13 80.1 62 59.7
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-11 73.2 72 50.0
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.9e-11 72.8 95 41.1
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.9e-11 72.8 115 37.4
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 3.3e-11 72.0 73 45.2
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.3e-07 60.1 113 31.9
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 4.9e-07 58.2 115 33.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.3e-07 57.4 123 32.5
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 8.3e-07 57.4 113 31.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.1e-06 55.1 115 30.4
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 9.2e-06 53.9 112 30.4
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 9.2e-06 53.9 124 31.5


User provided reference genes

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