Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 1.7e-291 1005.4 524 100.0
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 5.2e-269 930.6 524 89.7
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 4.4e-268 927.5 524 89.7
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 6.8e-261 903.7 524 85.9
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 7.5e-260 900.2 522 87.5
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 3.5e-257 891.3 524 86.8
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 1.5e-239 832.8 577 76.9
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 4.3e-239 831.2 521 78.7
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 5.4e-234 814.3 537 78.6
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.2e-233 813.1 536 75.4
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 4.6e-233 811.2 530 77.0
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 6.0e-233 810.8 537 78.2
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 7.8e-233 810.4 541 75.4
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.7e-232 809.3 511 78.1
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 1.5e-231 806.2 521 77.5
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.6e-230 802.7 517 76.0
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.1e-229 800.0 519 76.5
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 4.0e-229 798.1 519 76.9
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 1.2e-228 796.6 511 76.1
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 2.6e-228 795.4 517 75.2
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 4.4e-228 794.7 511 76.1
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 7.6e-228 793.9 512 76.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 7.6e-228 793.9 522 74.9
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 2.2e-227 792.3 518 75.3
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 4.9e-227 791.2 514 75.3
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.9e-226 789.3 531 75.0
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 3.2e-226 788.5 522 74.3
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 2.1e-225 785.8 511 75.5
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 1.3e-224 783.1 511 75.3
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 2.5e-223 778.9 522 74.5
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 1.1e-221 773.5 522 73.0
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 1.4e-221 773.1 523 75.3
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 2.4e-221 772.3 522 74.3
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.1e-221 771.9 519 72.3
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 4.0e-221 771.5 537 73.9
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 8.9e-221 770.4 506 75.3
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.0e-220 769.2 537 73.7
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 9.9e-220 766.9 519 76.5
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 9.9e-220 766.9 517 73.7
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 1.9e-218 762.7 512 73.8
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 4.2e-218 761.5 518 73.0
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 3.0e-216 755.4 518 73.0
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 5.1e-216 754.6 526 72.1
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 5.1e-216 754.6 519 75.1
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 2.5e-215 752.3 536 72.4
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 4.3e-215 751.5 528 69.9
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 4.3e-215 751.5 514 71.6
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 9.6e-215 750.4 522 72.0
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 2.4e-213 745.7 521 72.6
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.1e-213 745.3 520 73.7
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 4.0e-213 745.0 525 72.6
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.2e-212 743.4 518 71.4
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 1.5e-212 743.0 525 73.5
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 2.6e-212 742.3 517 72.9
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 3.4e-212 741.9 520 71.0
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 7.6e-212 740.7 523 70.7
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.3e-211 740.0 521 71.0
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.7e-211 739.6 519 71.7
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 2.2e-211 739.2 519 71.5
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 8.4e-211 737.3 519 69.6
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 8.4e-211 737.3 519 71.5
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.1e-210 736.9 522 70.9
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 1.1e-210 736.9 514 71.0
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 2.4e-210 735.7 519 71.7
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 5.4e-210 734.6 515 71.5
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 2.1e-209 732.6 519 71.5
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 6.0e-209 731.1 520 71.0
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 6.0e-209 731.1 516 71.5
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 1.3e-208 729.9 522 70.9
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 4.3e-207 724.9 513 71.0
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 7.4e-207 724.2 477 75.1
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 7.4e-207 724.2 520 69.2
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 7.4e-207 724.2 433 80.4
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.6e-206 723.0 521 70.8
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.5e-204 716.5 576 64.2
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 2.2e-203 712.6 521 69.9
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 6.4e-203 711.1 521 70.1
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 1.4e-202 709.9 515 68.5
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 1.9e-202 709.5 515 69.1
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 9.3e-202 707.2 570 65.4
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.2e-201 706.8 508 71.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 5.1e-200 701.4 522 68.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 3.3e-199 698.7 524 68.1
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 4.3e-199 698.4 521 67.0
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.3e-199 698.4 521 67.6
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 6.9e-197 691.0 521 67.2
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 3.4e-196 688.7 602 60.8
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 3.4e-196 688.7 561 65.6
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 4.5e-196 688.3 520 68.5
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 4.9e-195 684.9 521 65.3
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 5.5e-194 681.4 511 64.8
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 1.3e-192 676.8 515 66.0
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.8e-192 676.4 433 76.4
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 3.0e-192 675.6 525 68.0
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.9e-192 675.2 522 68.8
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 3.9e-192 675.2 521 65.8
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 3.3e-191 672.2 513 65.7
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 2.8e-190 669.1 519 64.4
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 2.7e-185 652.5 432 75.9
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 3.9e-184 648.7 544 62.7
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 7.4e-183 644.4 506 64.0
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 6.3e-182 641.3 496 67.9
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 8.2e-182 641.0 506 64.4
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 8.5e-179 630.9 521 63.3
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.7e-177 625.9 509 67.4
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 2.7e-177 625.9 555 59.6
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 1.8e-176 623.2 509 62.3
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.3e-176 622.9 521 62.4
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 8.8e-176 620.9 509 61.5
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 1.9e-170 603.2 523 61.8
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 7.9e-169 597.8 446 69.1
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 6.3e-166 588.2 407 70.8
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 3.5e-164 582.4 390 74.4
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.7e-153 545.4 515 58.4
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 4.1e-149 532.3 433 61.9
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 4.1e-133 479.2 415 56.4
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 2.8e-129 466.5 504 50.0
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 3.6e-129 466.1 446 59.2
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 6.8e-128 461.8 497 46.7
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 2.0e-127 460.3 470 50.0
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 9.8e-127 458.0 329 69.9
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 4.0e-120 436.0 521 45.5
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 9.2e-117 424.9 512 43.6
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.9e-115 419.5 312 66.0
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 1.6e-113 414.1 469 46.1
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 2.5e-106 390.2 462 45.0
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 5.6e-106 389.0 319 63.3
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 2.0e-103 380.6 520 48.3
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.9e-101 374.0 272 68.8
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 5.4e-101 372.5 290 66.2
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.5e-95 354.4 357 50.1
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 1.9e-77 294.3 534 35.4
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.6e-44 183.7 105 82.9
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.3e-30 138.7 125 54.4
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-25 122.1 75 81.3
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 4.3e-21 107.1 64 75.0
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 1.2e-20 105.5 145 44.1
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 1.8e-19 101.7 60 86.7
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 2.2e-17 94.7 56 85.7
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 6.2e-12 76.6 127 39.4
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 1.4e-11 75.5 70 54.3
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 1.2e-10 72.4 63 50.8
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 9.8e-10 69.3 243 25.5
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 3.7e-09 67.4 243 25.1
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 3.2e-08 64.3 164 28.0
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 9.2e-08 62.8 175 26.9
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 2.1e-07 61.6 48 62.5
FvH4_4g04520 Fragaria vesca HOM05D003335 ORTHO05D003853 2.1e-07 61.6 230 23.9
FAN17G2432 Fragaria x ananassa HOM05D003335 ORTHO05D003853 2.1e-07 61.6 230 23.9
FAN22G1996 Fragaria x ananassa HOM05D003335 ORTHO05D003853 2.1e-07 61.6 230 23.9
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 2.1e-07 61.6 175 27.4
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 2.7e-07 61.2 48 62.5
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 2.7e-07 61.2 164 26.8
FAN12G3742 Fragaria x ananassa HOM05D003335 ORTHO05D003853 2.7e-07 61.2 230 23.9
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 2.7e-07 61.2 242 22.7
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 3.5e-07 60.8 205 24.9
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 6.0e-07 60.1 164 26.2
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 6.0e-07 60.1 191 25.7
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 7.8e-07 59.7 191 25.7
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 7.8e-07 59.7 164 26.8
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 7.8e-07 59.7 164 26.8
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 1.0e-06 59.3 164 24.4
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 1.0e-06 59.3 243 23.5
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 1.3e-06 58.9 163 25.2
CSS0033617 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 1.3e-06 58.9 163 25.8
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 1.3e-06 58.9 164 24.4
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 1.3e-06 58.9 188 24.5
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 1.7e-06 58.5 164 24.4
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 1.7e-06 58.5 164 24.4
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 1.7e-06 58.5 200 26.5
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 1.7e-06 58.5 164 24.4
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 2.3e-06 58.2 164 26.8
CiPaw.02G107400 Carya illinoinensis HOM05D003335 ORTHO05D003853 2.3e-06 58.2 190 25.8
Pp3c5_9900 Physcomitrium patens HOM05D003335 ORTHO05D003853 2.3e-06 58.2 144 26.4
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 2.3e-06 58.2 164 26.8
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 3.0e-06 57.8 148 27.0
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.0e-06 57.8 124 30.6
Gohir.D02G048300 Gossypium hirsutum HOM05D003335 ORTHO05D003853 3.9e-06 57.4 243 22.6
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 3.9e-06 57.4 189 25.4
Gorai.005G053600 Gossypium raimondii HOM05D003335 ORTHO05D003853 6.6e-06 56.6 243 22.6
HanXRQChr01g0022981 Helianthus annuus HOM05D003335 ORTHO05D003853 6.6e-06 56.6 164 26.2
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 6.6e-06 56.6 163 25.2
GSVIVG01027911001 Vitis vinifera HOM05D003335 ORTHO05D003853 6.6e-06 56.6 190 23.7
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 8.6e-06 56.2 204 26.0
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 8.6e-06 56.2 192 24.5
RcHm_v2.0_Chr4g0395291 Rosa chinensis HOM05D003335 ORTHO05D003853 8.6e-06 56.2 164 25.6


User provided reference genes

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