Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.1e-189 666.4 325 100.0
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.8e-164 581.3 325 86.5
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 4.4e-109 398.7 328 61.6
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.8e-107 393.3 324 62.7
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.8e-107 393.3 330 61.5
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.2e-106 390.6 330 60.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.2e-106 390.6 329 60.8
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.0e-106 389.8 328 60.4
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 5.9e-106 388.3 329 59.9
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.9e-105 386.0 329 61.4
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 5.0e-105 385.2 329 61.4
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 5.0e-105 385.2 326 60.7
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 8.6e-105 384.4 326 61.0
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.1e-104 384.0 325 59.7
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.2e-103 380.6 324 61.1
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.8e-103 379.4 328 62.5
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 6.1e-103 378.3 329 58.4
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.8e-102 376.7 328 58.2
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.8e-102 376.7 319 61.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.8e-102 376.7 328 59.5
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 4.0e-102 375.6 329 59.6
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.2e-102 375.2 315 60.3
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 8.9e-102 374.4 327 61.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.5e-101 373.6 326 59.8
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 2.0e-101 373.2 325 58.2
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.0e-101 373.2 326 57.7
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 4.4e-101 372.1 328 58.2
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.4e-101 372.1 326 57.7
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 7.5e-101 371.3 326 59.2
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.3e-100 370.5 326 60.1
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.2e-100 369.8 325 58.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.7e-100 369.0 325 59.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 8.3e-100 367.9 341 56.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 3.2e-99 365.9 325 58.2
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.1e-99 365.5 278 62.6
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.6e-98 363.6 276 63.4
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.0e-98 363.2 323 58.2
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.7e-98 362.8 308 59.1
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.9e-98 361.7 328 59.1
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.9e-97 359.0 328 58.2
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 5.0e-97 358.6 328 58.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.0e-97 358.6 384 51.3
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 4.3e-96 355.5 312 59.9
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 9.5e-96 354.4 383 50.7
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.6e-95 353.6 258 67.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.8e-95 352.8 330 55.5
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 6.2e-95 351.7 269 62.8
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.2e-95 351.7 311 59.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 6.2e-95 351.7 333 53.5
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.0e-94 350.9 268 65.7
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-94 350.5 258 67.4
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-94 350.5 324 58.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.4e-94 350.5 324 58.0
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-94 350.5 258 66.7
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 2.3e-94 349.7 281 59.8
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.1e-94 349.4 326 58.3
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.1e-94 349.4 326 58.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.0e-94 349.0 328 57.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.2e-94 348.6 237 71.7
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 6.8e-94 348.2 324 57.4
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.8e-94 348.2 323 57.3
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 8.9e-94 347.8 324 58.3
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 8.9e-94 347.8 326 55.2
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.2e-93 347.4 324 58.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.2e-93 347.4 324 57.4
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.0e-93 346.7 272 64.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.6e-93 346.3 328 56.1
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 9.8e-93 344.4 308 59.1
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.2e-92 343.2 331 55.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.9e-92 342.8 258 64.7
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 3.7e-92 342.4 337 57.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 6.4e-92 341.7 326 55.5
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 8.3e-92 341.3 330 56.4
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 8.3e-92 341.3 258 64.7
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 8.3e-92 341.3 258 66.7
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-91 340.5 325 56.0
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 7.0e-91 338.2 326 56.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.0e-90 336.7 315 57.1
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-89 334.3 357 50.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.0e-89 332.8 329 54.1
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.9e-89 332.4 328 53.0
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.5e-88 330.5 350 52.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 2.5e-88 329.7 339 51.0
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.2e-87 327.4 330 50.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.7e-87 325.5 257 61.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 6.2e-87 325.1 340 50.6
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.8e-86 323.6 325 54.5
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 4.0e-86 322.4 358 49.4
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 6.8e-86 321.6 326 54.6
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 6.8e-86 321.6 350 49.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.9e-86 321.2 306 53.9
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-85 319.7 349 50.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-85 319.7 349 50.1
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 4.4e-85 318.9 327 54.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.7e-84 317.0 366 47.5
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.9e-84 316.2 211 73.5
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.9e-84 316.2 293 57.3
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.4e-83 313.2 344 48.3
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.2e-83 312.8 338 50.0
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 7.1e-83 311.6 355 48.5
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 6.0e-82 308.5 284 55.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 8.6e-81 304.7 236 64.4
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 7.3e-80 301.6 327 49.8
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.6e-79 299.3 214 69.6
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 4.7e-79 298.9 317 50.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 9.9e-77 291.2 314 50.0
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.7e-73 280.4 281 50.2
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.2e-70 268.9 210 65.2
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.7e-65 253.8 326 45.4
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.8e-62 243.8 376 39.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-59 234.2 241 53.1
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.4e-59 234.2 241 53.1
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.2e-59 233.0 260 49.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 7.1e-59 231.9 231 54.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.3e-57 226.9 242 50.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.5e-56 223.4 209 52.6
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 9.6e-56 221.5 245 50.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 8.1e-55 218.4 322 39.1
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 7.1e-51 205.3 230 46.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.3e-48 196.4 204 52.9
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 5.6e-48 195.7 322 37.3
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 5.5e-43 179.1 198 50.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 3.0e-41 173.3 280 33.9
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-40 171.0 232 42.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 9.6e-40 168.3 198 44.4
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 9.0e-38 161.8 272 39.7
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.9e-37 159.1 224 43.8
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.3e-36 157.9 202 44.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.2e-36 157.1 249 40.6
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-36 156.8 188 48.4
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.7e-34 150.2 171 50.9
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 3.7e-31 139.8 111 60.4
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.8e-31 139.4 93 74.2
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.6e-29 133.7 167 43.7
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.3e-25 120.6 263 31.9
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.2e-20 104.0 195 30.8
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.1e-16 91.7 118 44.1
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 7.4e-16 89.0 194 29.4
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.5e-08 64.7 88 35.2
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 3.1e-06 57.0 45 57.8


User provided reference genes

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