Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.3e-214 746.9 359 100.0
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.1e-193 677.2 358 91.1
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 9.0e-156 553.9 360 72.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.3e-154 550.1 360 72.2
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 7.9e-152 540.8 360 70.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 8.7e-151 537.3 358 72.9
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.1e-150 537.0 360 71.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 5.7e-150 534.6 358 70.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.8e-149 532.3 360 71.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 3.1e-148 528.9 359 70.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.0e-147 526.2 358 69.8
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.4e-147 525.4 359 69.6
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 4.5e-147 525.0 358 69.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.3e-146 523.5 360 71.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 6.5e-146 521.2 360 70.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.5e-145 519.2 362 68.8
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.5e-145 518.1 357 68.6
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 5.5e-145 518.1 359 69.9
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 7.2e-145 517.7 358 68.7
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-144 516.9 359 69.6
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.1e-144 516.2 362 69.6
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.6e-144 515.4 360 68.3
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.6e-144 515.4 358 68.7
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.1e-144 514.6 360 68.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 6.1e-144 514.6 359 68.2
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.0e-143 513.8 359 69.6
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.8e-143 513.1 371 69.8
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.3e-143 512.7 358 67.9
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.0e-143 512.3 360 68.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-142 510.4 358 68.7
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.0e-142 509.6 361 68.4
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.0e-142 509.6 361 68.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.3e-141 506.9 361 67.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.8e-141 505.8 357 68.3
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 3.1e-140 502.3 357 68.3
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.6e-139 499.2 363 68.6
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.6e-139 499.2 361 68.4
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 3.4e-139 498.8 362 66.9
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 3.4e-139 498.8 370 65.7
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 4.5e-139 498.4 358 65.9
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 4.5e-139 498.4 358 66.8
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.9e-139 498.0 360 66.9
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.7e-138 496.5 357 66.7
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 5.0e-138 495.0 360 66.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 6.5e-138 494.6 359 66.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 8.5e-138 494.2 358 66.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-137 493.4 360 66.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.4e-137 493.4 360 66.1
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-137 493.4 359 65.7
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.9e-137 493.0 360 66.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.5e-137 492.7 356 66.0
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 7.2e-137 491.1 358 65.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.2e-136 490.3 361 65.7
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.2e-136 490.3 365 65.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.7e-136 489.2 358 65.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.0e-135 487.3 360 64.4
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.0e-135 487.3 358 64.5
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.4e-135 486.9 357 64.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.8e-135 486.5 358 65.6
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 6.7e-135 484.6 360 65.8
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.0e-134 483.0 359 64.9
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-134 483.0 357 66.1
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.0e-134 483.0 432 56.5
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.3e-134 482.3 358 64.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.7e-133 479.9 333 69.1
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 4.8e-133 478.4 357 62.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.1e-132 477.2 357 63.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.1e-132 477.2 361 63.2
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.4e-132 476.9 360 65.0
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-132 476.5 360 65.0
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.1e-132 475.7 364 64.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.1e-132 475.3 359 64.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.3e-132 474.9 360 63.6
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.5e-131 473.4 354 65.3
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.2e-130 469.5 364 63.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.8e-130 468.8 483 52.6
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.1e-129 467.2 406 57.1
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.2e-129 465.3 358 62.8
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.2e-128 463.8 352 63.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.7e-128 461.8 356 63.2
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.7e-128 461.8 356 63.2
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 6.1e-128 461.5 358 61.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.6e-126 456.1 360 62.2
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 4.4e-126 455.3 429 54.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 7.4e-126 454.5 362 62.7
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 9.7e-126 454.1 404 57.4
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 4.8e-125 451.8 355 62.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 3.1e-124 449.1 304 69.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 4.1e-124 448.7 342 63.5
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 7.7e-123 444.5 326 66.9
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.7e-122 443.4 360 61.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 3.2e-121 439.1 360 60.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.2e-118 430.6 359 59.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.7e-118 428.3 354 60.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.7e-115 417.9 269 71.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.1e-113 414.1 360 56.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 3.2e-113 412.5 345 58.0
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.2e-110 404.1 352 58.0
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 4.1e-108 395.6 304 62.2
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 7.0e-108 394.8 359 56.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.0e-106 391.0 355 52.4
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 8.6e-106 387.9 361 55.1
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.3e-103 379.8 383 50.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 8.9e-103 377.9 322 58.1
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 3.5e-99 365.9 294 61.2
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 7.8e-99 364.8 353 54.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.0e-98 362.1 245 70.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.4e-92 343.2 421 42.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 4.1e-92 342.4 206 77.2
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.0e-91 338.6 207 75.8
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 8.6e-90 334.7 288 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 8.6e-82 308.1 407 40.8
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.3e-79 300.1 154 85.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.4e-78 296.2 359 46.5
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 6.4e-77 292.0 375 40.0
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 2.7e-75 286.6 362 42.5
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 5.6e-73 278.9 234 60.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.6e-64 249.6 132 84.8
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 9.0e-63 245.0 126 85.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 6.9e-55 218.8 266 45.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.9e-55 218.8 266 45.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.0e-47 193.0 211 52.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.3e-45 188.0 184 54.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 3.9e-42 176.4 206 44.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 6.7e-42 175.6 206 44.7
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.8e-40 170.2 123 59.3
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 7.6e-38 162.2 83 85.5
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 3.8e-29 133.3 75 81.3
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.8e-26 124.4 122 54.1
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-24 118.2 136 49.3
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.4e-20 102.1 122 48.4
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 3.3e-17 93.6 191 31.9
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.3e-10 70.9 95 45.3


User provided reference genes

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