Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 0.0e+00 1167.1 601 100.0
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.7e-252 875.9 602 74.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.2e-248 863.2 605 75.7
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 9.2e-246 853.6 564 78.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.2e-242 843.2 601 72.5
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.2e-242 843.2 585 75.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.6e-242 842.8 601 72.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 5.2e-241 837.8 555 76.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-237 826.6 610 72.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.6e-237 826.2 628 68.9
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.1e-237 825.9 582 73.5
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.7e-237 825.5 602 72.8
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 6.0e-237 824.3 608 72.5
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.8e-237 823.9 602 70.9
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.3e-236 823.2 605 72.1
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.3e-236 822.4 602 72.6
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.3e-236 822.4 602 72.6
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 5.1e-236 821.2 602 70.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 8.6e-236 820.5 609 71.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.9e-235 819.3 620 71.1
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.5e-235 818.9 604 72.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 8.1e-234 813.9 580 74.7
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.8e-233 812.8 539 76.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.0e-233 811.6 553 75.0
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.2e-233 811.2 606 70.6
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.4e-232 808.5 562 74.2
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 9.9e-232 807.0 618 70.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.9e-231 805.4 603 72.1
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 6.4e-231 804.3 506 79.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 8.4e-231 803.9 610 70.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.4e-230 802.4 536 74.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.6e-229 798.1 603 70.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.3e-228 796.6 604 70.2
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.3e-228 795.8 603 70.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 3.0e-228 795.4 605 69.9
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.3e-227 792.0 605 69.4
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.6e-227 791.2 594 71.2
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.6e-227 791.2 504 79.4
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.6e-226 788.5 543 74.8
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.8e-226 788.1 596 70.3
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-225 786.9 514 77.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.0e-224 782.7 608 69.2
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-224 782.7 591 69.9
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 7.6e-224 780.8 606 69.5
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.7e-223 779.6 594 68.9
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.1e-222 776.9 514 76.3
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.4e-222 776.5 505 78.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.4e-222 774.6 595 68.1
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.6e-221 773.1 562 71.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.7e-221 772.3 612 68.1
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 6.0e-221 771.2 538 73.4
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.0e-220 770.4 513 75.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.0e-220 770.4 541 74.7
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.0e-220 770.4 607 67.4
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.3e-220 770.0 547 71.7
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.0e-220 768.8 547 71.5
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 5.1e-220 768.1 601 69.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 6.7e-220 767.7 562 70.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.9e-219 766.1 604 67.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 4.3e-219 765.0 559 70.7
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 4.3e-219 765.0 619 67.4
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 7.4e-219 764.2 508 76.8
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 9.6e-219 763.8 601 67.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.6e-218 763.1 571 69.5
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.6e-218 763.1 561 71.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.1e-218 762.7 553 70.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.1e-218 762.7 559 70.7
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.1e-218 762.7 559 70.7
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.1e-218 762.7 601 68.4
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 8.1e-218 760.8 596 67.8
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.4e-217 760.0 607 67.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.4e-217 760.0 607 67.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.1e-217 758.8 608 66.6
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 5.3e-217 758.1 540 73.0
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.0e-216 756.1 607 66.9
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.9e-215 752.3 508 75.2
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.8e-215 751.9 590 67.6
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.9e-214 749.6 591 69.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.2e-214 748.4 508 74.8
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.5e-214 748.0 647 64.3
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.2e-213 746.9 596 65.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.1e-211 740.3 597 66.5
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.8e-210 734.9 545 69.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.1e-209 733.8 675 61.6
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 6.9e-209 731.1 591 66.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 9.3e-206 720.7 511 71.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 6.0e-205 718.0 658 62.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.1e-204 714.9 606 65.7
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 6.3e-202 708.0 603 64.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.0e-200 703.0 596 64.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.9e-200 701.4 465 77.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.7e-199 699.9 613 63.8
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.5e-195 686.0 537 67.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.6e-192 676.0 508 68.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-189 667.2 464 73.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.6e-189 665.2 578 63.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 4.6e-189 665.2 664 56.3
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.1e-187 660.6 573 62.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.4e-187 658.7 491 66.2
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.4e-185 653.7 609 60.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.1e-179 634.0 486 69.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 7.2e-174 614.8 388 80.2
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.8e-170 602.8 564 59.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 5.5e-166 588.6 444 68.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.6e-165 585.9 443 64.3
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.0e-164 582.8 528 60.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 6.2e-141 505.4 515 55.1
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.4e-137 494.2 350 72.6
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.5e-134 483.4 404 68.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-133 481.1 445 55.1
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 4.7e-133 479.2 488 52.9
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.4e-131 472.6 463 57.5
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.3e-127 461.1 395 59.7
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.0e-127 459.9 455 52.3
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.2e-125 454.5 500 50.2
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.4e-124 450.3 425 60.7
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.7e-122 444.1 514 51.6
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.9e-113 414.1 266 79.3
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 8.4e-106 388.7 488 45.1
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.5e-86 323.9 204 77.0
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.5e-86 323.9 309 54.7
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.0e-75 287.7 318 53.8
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.3e-74 285.0 173 78.6
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.5e-74 282.3 202 68.3
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 9.4e-73 278.9 211 68.7
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.3e-66 258.5 279 53.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.9e-66 257.3 262 50.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.4e-65 255.0 396 39.6
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.2e-64 251.9 178 70.8
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-60 236.5 255 54.9
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.6e-59 234.2 285 48.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.2e-57 226.9 137 78.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 5.5e-49 199.9 113 85.8
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.1e-48 196.4 177 61.0
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.8e-45 186.8 128 71.1
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.0e-39 167.2 274 39.4
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-35 155.6 125 64.0
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.8e-35 152.9 122 62.3
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.5e-33 147.9 106 67.9
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.6e-32 144.1 269 37.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-28 132.5 95 72.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.0e-26 125.9 123 54.5
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.5e-25 122.1 112 55.4
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-24 119.0 84 61.9
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.6e-24 117.5 276 34.1
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.5e-22 112.1 233 38.6
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.2e-21 108.2 88 62.5
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 4.1e-20 104.0 56 96.4
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.9e-17 95.1 57 87.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.5e-17 94.7 71 64.8
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-16 92.0 91 49.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.6e-16 90.9 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.4e-15 89.0 55 81.8
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-15 88.6 92 47.8
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.9e-13 80.5 248 28.6
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.9e-09 68.6 59 55.9
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.1e-08 65.1 40 80.0
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 4.7e-08 63.9 144 33.3
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 6.2e-08 63.5 36 83.3
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.2e-06 59.3 291 22.0
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-06 58.9 81 46.9


User provided reference genes

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