Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 8.0e-233 810.1 414 100.0
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.0e-208 728.0 414 88.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.9e-206 721.8 414 87.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.2e-205 718.4 414 87.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.6e-204 716.1 414 87.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.5e-204 714.9 414 86.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.5e-204 714.9 414 86.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.3e-203 712.2 409 86.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 5.1e-203 711.1 414 86.2
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 6.6e-203 710.7 414 86.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.5e-202 709.5 410 86.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.3e-202 708.0 414 85.7
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 5.6e-202 707.6 414 85.5
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.3e-201 706.4 414 84.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.3e-201 706.4 414 84.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.1e-201 705.7 414 84.8
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.1e-201 705.7 414 85.3
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 86.0
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 4.8e-201 704.5 414 85.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 8.1e-201 703.7 416 85.6
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.8e-200 702.6 414 83.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 9.0e-200 700.3 411 84.9
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.5e-199 699.5 414 84.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 84.1
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.2e-198 695.7 413 85.0
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-198 695.3 414 83.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.8e-198 694.9 414 82.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.9e-198 694.5 414 82.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-197 693.3 414 82.9
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.4e-197 692.2 411 84.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.4e-197 692.2 445 79.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 3.2e-197 691.8 413 82.6
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.2e-197 691.4 414 83.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 4.2e-197 691.4 414 83.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.3e-197 690.3 412 84.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.7e-196 688.7 413 83.5
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.7e-196 688.7 412 82.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.5e-196 688.3 414 82.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.0e-196 687.6 414 82.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.3e-195 686.4 414 82.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.3e-195 685.6 413 83.1
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.9e-195 684.9 414 81.6
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 8.7e-195 683.7 413 82.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.4e-192 676.4 409 83.6
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.4e-192 676.4 416 82.2
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 81.2
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 81.2
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 81.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 80.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 80.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 2.6e-191 672.2 409 80.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.6e-191 672.2 413 81.8
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 80.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 4.5e-191 671.4 414 80.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 80.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 80.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.3e-190 669.8 413 80.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.8e-190 668.3 413 80.9
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 8.4e-190 667.2 415 81.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.4e-189 666.4 414 79.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.5e-189 665.6 413 79.7
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.2e-189 664.8 414 80.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 4.2e-189 664.8 413 80.1
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.3e-189 663.7 414 79.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.2e-188 663.3 413 79.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-188 662.9 414 80.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.6e-188 662.9 411 79.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 4.6e-188 661.4 411 80.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 7.9e-188 660.6 415 81.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 81.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.9e-187 658.3 426 78.2
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.9e-187 658.3 426 78.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.9e-187 658.3 420 78.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-187 657.9 426 77.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 78.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.7e-187 657.1 420 78.6
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 79.0
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 7.4e-186 654.1 409 81.4
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.8e-184 649.4 409 79.5
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.6e-183 645.6 414 78.3
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 3.4e-183 645.2 436 75.7
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.6e-180 636.3 375 85.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.5e-180 635.2 371 86.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 6.7e-179 630.9 427 74.5
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.1e-178 630.2 414 77.5
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.5e-178 629.8 406 79.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.5e-178 629.0 415 75.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.3e-178 628.6 413 73.4
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 9.7e-178 627.1 415 75.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-175 619.0 416 75.7
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.7e-172 609.0 415 73.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.5e-170 602.4 410 74.9
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.8e-166 588.6 412 74.0
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.6e-164 582.0 414 71.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 5.7e-162 574.7 371 79.5
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 8.2e-161 570.9 485 66.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-160 570.5 408 69.4
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.9e-159 564.7 409 67.5
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-158 562.4 418 69.6
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.7e-154 548.1 316 87.7
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.3e-152 541.6 409 69.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.2e-149 531.9 399 65.9
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.1e-144 517.3 406 60.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.1e-144 514.2 296 85.8
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.8e-142 508.8 412 60.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-139 500.4 281 88.6
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.2e-139 498.4 281 88.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 6.8e-139 498.0 305 79.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.2e-124 450.7 257 87.9
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 5.8e-114 415.2 254 80.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 9.8e-114 414.5 314 67.8
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 9.8e-114 414.5 285 71.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.4e-113 411.8 313 67.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-102 377.9 284 67.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.3e-101 372.5 292 69.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.3e-101 372.5 415 47.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.0e-86 324.7 191 86.4
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-81 307.0 238 66.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.9e-81 305.8 205 75.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 9.6e-77 291.6 184 73.9
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.8e-70 270.8 172 79.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.9e-70 269.6 199 67.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-64 249.6 204 64.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.1e-63 247.3 401 36.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.2e-60 237.3 220 57.7
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.0e-57 228.4 405 32.6
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.4e-56 224.6 321 36.8
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.5e-56 222.6 131 85.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-51 208.4 126 80.2
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-49 201.1 121 75.2
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-48 197.6 199 57.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-44 184.1 161 61.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-44 182.2 177 57.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.7e-42 175.6 102 78.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 8.8e-38 162.2 414 31.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.4e-37 159.8 114 68.4
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.7e-34 150.6 107 62.6
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.5e-34 149.8 83 81.9
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.0e-30 138.7 80 81.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.4e-27 127.5 117 62.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 4.1e-19 100.1 108 56.5
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.9e-17 94.0 143 46.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.8e-17 93.6 127 52.0
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.8e-17 93.6 159 37.7
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.0e-17 93.2 51 88.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.8e-15 87.4 146 45.2
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-13 82.0 54 83.3
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-12 77.0 55 70.9
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-11 75.5 71 59.2
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.4e-11 73.2 50 72.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 5.9e-10 69.7 81 50.6
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.5e-08 64.3 38 81.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.8e-07 60.8 45 71.1


User provided reference genes

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