Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 4.8e-188 661.0 332 100.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 7.3e-152 540.8 333 81.1
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 7.3e-152 540.8 331 81.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 9.5e-152 540.4 333 80.2
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 8.9e-150 533.9 333 80.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.0e-149 532.7 332 80.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.4e-149 531.6 330 79.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-148 529.6 330 79.7
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.9e-148 528.9 331 80.1
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 6.4e-148 527.7 337 80.4
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.4e-147 526.6 339 79.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.2e-147 525.4 333 77.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 9.2e-147 523.9 332 81.0
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.6e-146 523.1 331 79.2
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 7.8e-146 520.8 337 80.7
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 5.1e-145 518.1 332 77.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.9e-144 516.2 333 77.2
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 2.5e-144 515.8 338 79.6
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.3e-144 515.0 335 78.2
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 7.3e-144 514.2 323 78.9
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-143 513.5 332 77.4
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-143 513.1 333 76.6
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.1e-143 512.7 333 77.8
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 3.6e-143 511.9 333 76.6
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.7e-143 511.5 332 78.3
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 6.2e-143 511.1 332 78.0
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.4e-142 509.2 333 77.5
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 3.1e-142 508.8 333 76.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 4.0e-142 508.4 332 76.5
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 9.0e-142 507.3 332 77.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 2.0e-141 506.1 331 78.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.0e-141 506.1 334 75.7
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 3.4e-141 505.4 330 76.7
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 5.8e-141 504.6 339 77.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 5.8e-141 504.6 339 76.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 5.8e-141 504.6 339 76.7
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 7.6e-141 504.2 333 77.8
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-140 503.4 332 74.7
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.2e-140 502.7 338 77.5
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.2e-140 502.7 336 75.0
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.8e-140 501.9 334 74.9
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.4e-139 499.2 332 76.5
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.4e-139 499.2 333 75.7
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.2e-139 498.4 332 75.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 4.2e-139 498.4 332 74.1
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.4e-139 498.0 336 75.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 9.3e-139 497.3 333 74.8
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.6e-138 496.5 323 75.5
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.7e-138 495.7 318 79.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.5e-138 495.4 333 75.7
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 4.6e-138 495.0 334 74.9
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.0e-137 493.8 333 74.5
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.3e-137 492.7 334 74.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.9e-137 491.9 342 77.2
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.1e-137 491.5 335 74.6
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.9e-136 489.6 334 73.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.9e-136 489.6 334 74.3
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.3e-136 488.8 334 73.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 7.3e-136 487.6 333 73.0
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.3e-135 486.9 334 74.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.6e-135 486.5 334 74.0
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.1e-135 486.1 334 73.4
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 2.8e-135 485.7 334 74.0
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.8e-135 485.7 334 73.4
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 4.8e-135 485.0 341 73.3
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 8.1e-135 484.2 331 74.3
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.1e-135 484.2 335 73.4
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.1e-135 484.2 332 75.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.1e-134 482.3 334 72.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.0e-134 481.9 336 73.8
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 6.9e-134 481.1 336 73.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.0e-133 479.6 334 72.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.0e-133 479.6 330 72.4
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.6e-133 479.2 336 72.0
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 4.5e-133 478.4 336 72.3
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.8e-133 478.0 334 72.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 7.6e-133 477.6 324 74.4
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.3e-132 476.9 378 66.7
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-132 476.9 332 73.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 3.8e-132 475.3 328 74.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 3.8e-132 475.3 328 74.1
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 4.9e-132 474.9 336 71.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 6.4e-132 474.6 331 73.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 7.1e-131 471.1 339 73.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 9.3e-131 470.7 337 71.5
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 9.3e-131 470.7 333 71.2
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-130 470.3 354 67.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.1e-130 469.5 331 71.3
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.6e-130 468.4 330 71.5
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.1e-128 463.8 334 70.7
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.9e-128 463.0 340 72.9
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.3e-128 461.8 344 73.3
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.4e-126 456.8 339 71.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.4e-126 456.1 338 69.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.2e-125 453.8 330 69.4
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 7.6e-125 451.1 341 68.0
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.2e-124 449.5 338 67.8
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 6.4e-124 448.0 354 66.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 6.4e-124 448.0 354 66.1
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.1e-122 443.0 340 67.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.5e-122 442.2 334 68.3
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 4.8e-119 431.8 357 69.2
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.4e-115 420.2 360 64.4
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 9.3e-115 417.5 336 64.0
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.1e-114 416.4 333 66.1
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 6.7e-113 411.4 262 79.0
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 9.7e-112 407.5 352 62.8
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-111 407.1 352 61.9
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 7.6e-109 397.9 340 61.8
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 2.1e-106 389.8 283 73.1
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.6e-106 389.0 335 61.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.3e-105 387.1 342 59.9
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 5.1e-105 385.2 360 61.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 7.4e-104 381.3 329 61.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.5e-100 368.2 323 63.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 6.1e-98 361.7 319 61.1
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.6e-88 329.7 229 72.5
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.0e-84 317.8 243 68.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.3e-76 290.8 211 71.6
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.9e-75 287.0 353 49.0
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.5e-75 285.4 256 60.9
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.7e-74 283.1 267 61.8
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 4.5e-69 265.8 185 71.4
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.1e-66 255.4 189 69.8
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 7.5e-64 248.4 380 41.8
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-61 241.1 363 43.3
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-61 241.1 355 43.7
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.9e-61 238.8 356 43.8
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.1e-54 218.0 223 53.8
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 9.2e-54 214.9 218 56.4
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.7e-53 213.4 356 41.3
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 8.3e-47 191.8 174 53.4
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 7.8e-45 185.3 369 36.6
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.2e-40 171.4 374 35.0
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.3e-36 157.1 344 37.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-30 137.5 105 69.5
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.6e-26 124.4 141 49.6
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 2.1e-26 124.0 347 32.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.0e-25 119.8 125 50.4
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 5.3e-25 119.4 106 55.7
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.2e-24 118.2 147 46.9
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-24 117.5 85 67.1
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.4e-24 116.7 87 62.1
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.8e-23 113.2 102 61.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 87 59.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.7e-20 104.4 80 66.2
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-19 101.7 72 66.7
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.1e-18 97.4 55 81.8
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.4e-17 94.0 154 35.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-16 91.3 60 70.0
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.4e-14 84.7 41 95.1
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 4.6e-13 79.7 340 28.2
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.7e-10 70.1 169 30.2
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 3.1e-09 67.0 61 49.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 6.9e-09 65.9 43 69.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 4.9e-07 59.7 174 24.1
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 7.1e-06 55.8 38 68.4


User provided reference genes

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