Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 8.4e-277 956.4 502 100.0
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 5.6e-79 299.3 521 41.3
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.9e-75 287.0 478 42.3
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.3e-72 278.1 504 39.7
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 8.1e-70 268.9 518 41.3
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 8.1e-70 268.9 486 38.9
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 9.0e-69 265.4 520 37.5
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 4.9e-67 259.6 402 43.0
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 4.9e-67 259.6 402 43.3
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 6.4e-67 259.2 514 38.5
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 8.4e-67 258.8 510 39.4
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 1.1e-63 248.4 451 40.1
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 2.8e-62 243.8 509 36.3
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.8e-62 243.8 514 37.5
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.4e-61 241.5 498 38.2
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.8e-61 241.1 492 36.4
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.4e-61 240.7 399 41.9
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 3.1e-61 240.4 421 39.9
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 4.0e-61 240.0 415 40.0
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.5e-60 238.0 519 34.9
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 3.8e-59 233.4 400 40.0
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 4.9e-59 233.0 400 40.8
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.1e-58 231.9 398 39.7
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 2.4e-58 230.7 402 39.3
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 3.2e-58 230.3 411 38.4
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 7.1e-58 229.2 505 35.6
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.2e-57 228.4 417 38.1
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.1e-57 227.6 408 42.4
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 7.9e-57 225.7 442 35.7
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.3e-56 224.9 413 38.7
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.8e-56 224.6 526 35.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.8e-56 224.6 300 46.0
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 2.3e-56 224.2 400 39.8
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 3.0e-56 223.8 507 36.1
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 3.9e-56 223.4 416 38.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 5.1e-56 223.0 411 40.4
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 8.7e-56 222.2 526 35.4
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.5e-55 220.7 439 39.0
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 3.3e-55 220.3 420 36.4
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 5.6e-55 219.5 406 36.5
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 3.7e-54 216.9 452 36.9
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 3.7e-54 216.9 403 39.5
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.7e-54 216.9 504 35.7
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 6.2e-54 216.1 455 35.8
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 1.4e-53 214.9 432 38.0
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.4e-53 214.2 443 35.7
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 5.3e-53 213.0 432 37.5
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 6.9e-53 212.6 395 38.5
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.9e-53 212.6 504 35.3
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 2.0e-52 211.1 408 38.0
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 5.8e-52 209.5 490 35.5
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.7e-51 208.0 436 36.0
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.7e-51 208.0 393 38.4
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.7e-51 208.0 441 36.3
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 2.9e-51 207.2 436 35.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 2.9e-51 207.2 398 37.9
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 3.8e-51 206.8 537 35.2
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.9e-51 206.5 473 35.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 6.4e-51 206.1 475 36.0
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 6.4e-51 206.1 401 37.2
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.4e-51 206.1 405 38.8
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.1e-50 205.3 474 36.1
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 1.4e-50 204.9 513 34.7
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 1.9e-50 204.5 455 35.2
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.2e-50 203.4 456 36.4
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 4.2e-50 203.4 401 38.4
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 4.2e-50 203.4 395 36.2
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 5.5e-50 203.0 403 35.7
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 9.3e-50 202.2 508 33.9
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.6e-49 201.4 392 34.9
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 2.1e-49 201.1 435 36.6
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 2.7e-49 200.7 392 34.9
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 3.5e-49 200.3 450 35.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 4.6e-49 199.9 393 36.4
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.3e-48 197.6 473 34.0
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 5.1e-48 196.4 439 35.5
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.7e-48 196.1 475 32.8
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.1e-47 195.3 460 35.4
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.1e-47 195.3 460 34.6
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 1.9e-47 194.5 408 34.8
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.9e-47 194.5 418 38.3
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 2.5e-47 194.1 438 34.9
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 3.3e-47 193.7 439 35.8
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 4.3e-47 193.4 476 33.6
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 4.3e-47 193.4 508 33.3
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 9.6e-47 192.2 282 40.8
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 6.9e-45 186.0 272 40.8
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 1.2e-44 185.3 394 36.0
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 4.5e-44 183.3 321 39.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 4.9e-43 179.9 397 34.5
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.0e-40 172.2 398 35.9
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.0e-40 172.2 398 35.9
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 3.9e-40 170.2 176 50.0
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 5.1e-40 169.9 337 38.6
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.4e-39 166.0 312 38.1
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 6.9e-37 159.5 401 33.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.5e-36 158.3 315 34.6
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 6.5e-35 152.9 187 47.1
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 3.6e-33 147.1 179 43.0
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 3.9e-32 143.7 313 34.8
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 1.1e-31 142.1 232 38.4
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.3e-30 138.7 181 40.9
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 2.8e-30 137.5 206 40.3
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 9.1e-29 132.5 362 32.6
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 2.6e-28 131.0 171 43.3
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 7.7e-28 129.4 196 36.2
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 8.5e-27 125.9 370 29.5
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 3.3e-23 114.0 162 39.5
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 3.7e-22 110.5 257 31.5
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 4.5e-20 103.6 79 60.8
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.8e-16 91.7 100 50.0
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.2e-10 70.9 164 34.1
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 8.8e-08 62.8 64 45.3
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 8.8e-08 62.8 64 45.3


User provided reference genes

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