Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.3e-160 569.7 304 100.0
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.6e-153 546.2 304 92.4
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.8e-152 542.7 304 94.1
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 3.9e-152 541.6 304 93.4
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.8e-149 532.7 304 90.1
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.7e-142 509.6 304 85.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.2e-140 503.4 302 87.4
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.0e-136 488.8 305 84.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 8.8e-136 487.3 305 83.9
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.7e-135 484.6 305 83.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.7e-135 484.6 305 83.6
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.7e-134 483.0 305 83.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.2e-132 476.9 305 82.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 4.5e-132 474.9 304 80.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 7.7e-132 474.2 304 80.6
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.3e-131 473.4 304 82.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-131 471.5 306 82.7
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-131 471.5 306 82.7
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 5.0e-131 471.5 306 82.7
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-129 466.8 307 78.2
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.1e-129 466.1 304 79.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.7e-129 465.7 305 79.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 2.7e-129 465.7 304 78.9
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 3.0e-128 462.2 306 78.1
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 8.8e-128 460.7 307 78.5
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.6e-127 459.1 304 78.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 3.3e-127 458.8 304 78.9
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 78.2
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.7e-127 458.0 304 79.3
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.7e-127 458.0 304 79.3
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 9.7e-127 457.2 304 79.9
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 80.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 80.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.3e-126 456.8 306 78.4
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.7e-126 456.4 303 80.2
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 3.7e-126 455.3 305 80.3
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 6.3e-126 454.5 304 76.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 8.2e-126 454.1 307 77.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 76.6
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 77.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.1e-125 453.8 305 76.7
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.1e-125 453.8 305 77.4
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.4e-125 453.4 304 79.9
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.4e-125 453.4 305 79.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.4e-125 453.4 304 78.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 76.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 4.1e-125 451.8 306 80.1
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.3e-125 451.4 304 80.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 78.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 7.7e-124 447.6 304 79.6
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 75.7
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.9e-123 445.7 311 75.6
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 79.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.5e-123 444.5 304 78.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.5e-123 444.1 289 79.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 78.6
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 74.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.5e-122 443.4 304 78.0
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.9e-122 443.0 306 76.8
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.5e-122 442.6 303 79.2
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-122 442.2 304 74.0
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 7.2e-122 441.0 304 79.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 75.0
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 77.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.1e-121 439.5 304 74.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.1e-121 439.5 304 78.0
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.7e-121 439.1 297 77.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 8.0e-121 437.6 305 77.4
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 74.3
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 75.3
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 77.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 73.7
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-120 437.2 306 77.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.4e-120 436.8 305 77.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 78.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.0e-120 435.6 304 78.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.2e-120 434.9 305 74.8
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.2e-120 434.9 301 75.4
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 6.8e-120 434.5 304 76.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 8.8e-120 434.1 305 74.8
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.8e-120 434.1 301 73.8
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.5e-119 433.3 304 73.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.5e-119 433.3 304 75.0
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.0e-119 433.0 304 75.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.4e-119 432.2 304 73.0
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 4.4e-119 431.8 308 72.4
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 7.5e-119 431.0 304 73.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.5e-119 431.0 304 75.7
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 9.7e-119 430.6 301 73.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.7e-118 429.9 305 77.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.2e-118 429.5 304 72.7
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.2e-118 429.5 304 73.4
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.7e-118 428.7 304 74.7
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 8.3e-118 427.6 302 72.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-117 426.4 304 73.4
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 3.1e-117 425.6 304 73.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.6e-116 423.3 304 74.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.6e-116 423.3 304 74.3
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 3.5e-116 422.2 304 75.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-116 422.2 304 75.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 3.5e-116 422.2 304 75.0
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 4.5e-116 421.8 305 75.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-115 419.5 303 69.6
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.0e-115 418.3 305 70.5
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.9e-114 416.4 304 70.4
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.7e-113 411.8 304 73.0
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.8e-110 402.5 301 74.4
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.3e-110 401.4 305 68.5
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 4.1e-109 398.7 312 68.9
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.0e-108 396.4 306 67.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 8.0e-105 384.4 304 66.1
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 5.2e-104 381.7 304 67.1
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 6.8e-104 381.3 282 74.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.5e-100 368.6 304 67.1
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 3.3e-98 362.5 293 67.9
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.4e-96 357.1 311 59.8
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 6.6e-91 338.2 323 56.7
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.0e-87 326.6 305 55.4
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.9e-86 322.8 195 79.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.1e-83 312.0 254 68.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.2e-81 307.4 254 65.7
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.1e-81 306.6 300 55.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.8e-81 306.2 191 80.1
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.9e-78 295.4 305 52.5
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.3e-74 282.3 304 55.6
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.9e-66 256.9 134 93.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.3e-66 256.1 301 48.5
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-61 240.0 193 67.9
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.5e-58 230.7 199 64.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-58 230.3 271 53.1
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.6e-57 227.3 204 64.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 9.0e-48 194.9 311 43.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.7e-46 190.7 296 43.6
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.4e-45 187.6 200 54.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.3e-43 181.0 168 64.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-42 177.2 200 51.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.8e-40 170.6 199 49.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.0e-38 164.9 110 77.3
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 6.5e-38 162.2 231 42.9
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-37 160.6 171 52.6
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 5.5e-37 159.1 104 74.0
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.2e-30 137.1 83 77.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.2e-29 132.9 262 43.5
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.1e-21 108.2 58 84.5
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 58 82.8
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.2e-21 106.3 116 62.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 9.4e-21 105.1 61 78.7
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.4e-19 101.3 117 56.4
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.6e-18 97.1 304 31.2
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-18 97.1 99 60.6
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.3e-18 96.7 150 45.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 3.3e-18 96.7 68 67.6
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 5.7e-18 95.9 304 30.9
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 7.7e-15 85.5 98 54.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.8e-09 67.0 62 61.3
Psat4g130480 Pisum sativum HOM05D004662 ORTHO05D326392 4.8e-09 66.2 44 75.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 4.1e-08 63.2 135 38.5
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 5.0e-06 56.2 35 80.0


User provided reference genes

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