Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 1.2e-39 166.0 83 100.0
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 3.6e-31 137.9 82 87.8
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 3.0e-30 134.8 82 86.6
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 1.1e-29 132.9 82 85.4
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 5.7e-29 130.6 82 82.9
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 2.9e-25 118.2 82 75.6
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 2.9e-25 118.2 82 75.6
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 2.9e-25 118.2 82 75.6
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 2.9e-25 118.2 82 75.6
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 6.5e-25 117.1 82 73.2
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 6.5e-25 117.1 82 73.2
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 1.1e-24 116.3 82 75.6
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 1.1e-24 116.3 82 72.0
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.1e-24 116.3 82 72.0
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.9e-24 115.5 82 72.0
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 1.9e-24 115.5 82 72.0
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 2.5e-24 115.2 82 73.2
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 2.5e-24 115.2 82 73.2
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 3.2e-24 114.8 82 73.2
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 4.2e-24 114.4 82 70.7
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 4.2e-24 114.4 82 68.3
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 4.2e-24 114.4 82 70.7
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 4.2e-24 114.4 82 68.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 4.2e-24 114.4 82 67.1
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 5.5e-24 114.0 82 68.3
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 9.4e-24 113.2 82 72.0
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.2e-23 112.8 82 69.5
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.2e-23 112.8 82 69.5
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.2e-23 112.8 82 69.5
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.6e-23 112.5 82 70.7
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.6e-23 112.5 82 69.5
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 2.1e-23 112.1 82 69.5
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 2.1e-23 112.1 82 72.0
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 2.1e-23 112.1 82 69.5
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 2.7e-23 111.7 82 68.3
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 2.7e-23 111.7 82 68.3
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 2.7e-23 111.7 82 68.3
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 2.7e-23 111.7 82 68.3
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 2.7e-23 111.7 82 68.3
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 3.6e-23 111.3 82 67.1
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 3.6e-23 111.3 82 65.9
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.6e-23 111.3 82 67.1
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 68.3
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 69.5
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 68.3
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 70.7
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 69.5
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 4.7e-23 110.9 82 69.5
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 6.1e-23 110.5 82 69.5
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 6.1e-23 110.5 82 69.5
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 8.0e-23 110.2 82 68.3
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 8.0e-23 110.2 82 67.1
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 8.0e-23 110.2 82 65.9
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 8.0e-23 110.2 82 68.3
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 8.0e-23 110.2 80 70.0
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 1.0e-22 109.8 82 67.1
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 1.4e-22 109.4 82 68.3
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-22 109.4 82 67.1
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-22 109.4 82 67.1
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.4e-22 109.4 82 68.3
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 1.4e-22 109.4 82 67.1
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 2.3e-22 108.6 82 64.6
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.3e-22 108.6 82 68.3
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 2.3e-22 108.6 82 68.3
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 2.3e-22 108.6 82 68.3
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 2.3e-22 108.6 82 67.1
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 3.0e-22 108.2 82 69.5
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 3.0e-22 108.2 82 64.6
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 3.0e-22 108.2 82 64.6
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.0e-22 108.2 82 67.1
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.0e-22 108.2 82 67.1
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 3.0e-22 108.2 80 66.2
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 4.0e-22 107.8 82 68.3
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 5.2e-22 107.5 82 64.6
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 5.2e-22 107.5 82 64.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 5.2e-22 107.5 82 64.6
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 6.7e-22 107.1 82 64.6
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 6.7e-22 107.1 82 64.6
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 6.7e-22 107.1 80 66.2
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 6.7e-22 107.1 82 67.1
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 1.1e-21 106.3 82 65.9
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.1e-21 106.3 82 65.9
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.1e-21 106.3 82 65.9
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 1.1e-21 106.3 82 67.1
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 1.5e-21 105.9 82 68.3
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 2.0e-21 105.5 82 64.6
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.0e-21 105.5 82 64.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 2.6e-21 105.1 82 65.9
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 2.6e-21 105.1 82 67.1
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 2.6e-21 105.1 80 63.8
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 3.3e-21 104.8 82 65.9
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 3.3e-21 104.8 82 67.1
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 5.7e-21 104.0 82 65.9
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 7.5e-21 103.6 80 63.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 1.3e-20 102.8 82 64.6
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.3e-20 102.8 82 64.6
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.7e-20 102.4 82 63.4
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.7e-20 102.4 82 63.4
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.2e-20 102.1 82 63.4
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 2.2e-20 102.1 82 65.9
TPR.G15895 Trifolium pratense HOM05D003404 ORTHO05D004052 2.8e-20 101.7 56 91.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 4.8e-20 100.9 82 64.6
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 4.8e-20 100.9 82 67.1
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 4.8e-20 100.9 82 67.1
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 4.8e-20 100.9 82 61.0
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 4.8e-20 100.9 82 61.0
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 8.2e-20 100.1 82 64.6
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.8e-19 99.0 82 64.6
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 1.8e-19 99.0 82 64.6
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 1.8e-19 99.0 82 64.6
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 2.4e-19 98.6 82 62.2
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 3.1e-19 98.2 82 62.2
TPR.G40778 Trifolium pratense HOM05D003404 ORTHO05D004052 3.1e-19 98.2 70 72.9
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 7.0e-19 97.1 82 64.6
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 9.1e-19 96.7 82 59.8
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.6e-18 95.9 82 61.0
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 3.8e-17 91.3 82 54.9
TPR.G21366 Trifolium pratense HOM05D003404 ORTHO05D004052 2.1e-15 85.5 48 95.8
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 3.6e-15 84.7 73 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 8.0e-15 83.6 82 56.1
SEGI_37814 Sequoiadendron giganteum HOM05D003404 ORTHO05D004052 2.3e-14 82.0 80 50.0
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 8.8e-14 80.1 82 54.9
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 3.4e-13 78.2 55 67.3
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 4.1e-11 71.2 60 61.7
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 3.5e-10 68.2 71 50.7
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.0e-09 66.6 54 66.7
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 2.2e-09 65.5 41 70.7
Hund15376 Selenicereus undatus HOM05D003404 ORTHO05D004052 2.9e-09 65.1 82 48.8
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 9.4e-08 60.1 71 43.7
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 1.6e-07 59.3 46 71.7
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 1.6e-07 59.3 46 69.6
Lsat_1_v5_gn_6_52600 Lactuca sativa HOM05D003404 ORTHO05D016190 6.1e-07 57.4 52 63.5
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.8e-06 55.8 80 40.0


User provided reference genes

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