Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 0.0e+00 1196.8 596 100.0
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 0.0e+00 1097.8 599 92.5
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 6.6e-308 1060.1 599 89.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.8e-306 1054.7 599 88.1
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 8.0e-306 1053.1 582 89.2
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 2.7e-301 1038.1 595 88.1
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 5.6e-299 1030.4 599 87.0
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 2.1e-298 1028.5 599 86.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 5.4e-286 987.3 601 82.2
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 1.9e-283 978.8 603 83.4
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 3.3e-283 978.0 602 81.2
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 5.6e-283 977.2 603 83.4
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 1.7e-279 965.7 599 80.3
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 4.9e-279 964.1 602 80.6
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 6.4e-279 963.8 602 80.7
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 6.4e-279 963.8 602 80.7
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.6e-277 959.1 601 79.9
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 4.3e-275 951.0 604 79.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 7.3e-275 950.3 604 79.0
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 1.3e-274 949.5 598 79.8
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.1e-273 946.4 606 79.2
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 4.0e-273 944.5 588 79.8
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 3.4e-272 941.4 603 78.8
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.4e-272 941.0 596 79.0
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 5.8e-272 940.6 588 80.1
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.9e-270 935.6 601 78.5
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 1.9e-270 935.6 604 77.8
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.4e-270 935.3 594 78.8
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 5.4e-270 934.1 600 77.7
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 1.2e-269 932.9 585 79.1
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 1.2e-269 932.9 602 77.7
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 2.1e-269 932.2 603 77.8
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 4.6e-269 931.0 614 76.2
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 1.7e-268 929.1 603 77.8
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 5.6e-267 924.1 613 76.2
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.4e-265 918.7 604 76.7
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 2.4e-265 918.7 604 76.3
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 5.3e-265 917.5 586 79.0
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 2.6e-264 915.2 603 76.5
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 9.9e-264 913.3 589 77.4
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 2.3e-260 902.1 584 77.2
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 4.3e-259 897.9 604 75.3
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 4.3e-259 897.9 603 75.0
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 1.3e-258 896.3 602 75.7
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 1.6e-258 896.0 597 75.0
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 5.3e-257 891.0 524 82.6
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 5.3e-257 891.0 585 76.1
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 3.4e-256 888.3 642 71.5
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 4.5e-256 887.9 594 74.6
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 2.2e-255 885.6 544 79.4
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 1.1e-254 883.2 588 75.0
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 1.4e-254 882.9 602 73.3
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.9e-254 882.5 589 74.5
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 3.5e-253 878.2 596 73.7
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 4.6e-253 877.9 604 73.7
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.0e-252 876.7 602 72.9
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 2.3e-252 875.5 591 75.5
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 8.7e-252 873.6 587 73.6
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.5e-251 872.8 532 79.7
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 4.1e-249 864.8 595 72.8
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.2e-248 863.2 589 73.7
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 5.0e-247 857.8 595 72.1
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 1.1e-246 856.7 606 71.1
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 7.2e-246 854.0 538 77.1
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 9.3e-246 853.6 604 71.0
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 3.5e-245 851.7 598 71.4
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.0e-244 850.1 583 72.0
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 3.0e-244 848.6 583 72.0
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 5.1e-244 847.8 590 72.4
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 5.1e-244 847.8 577 74.7
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 1.9e-243 845.9 624 68.9
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.7e-243 844.3 630 70.5
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 9.7e-243 843.6 596 72.0
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.3e-242 843.2 511 79.1
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 1.6e-242 842.8 628 68.3
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 1.6e-242 842.8 623 68.5
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 4.1e-241 838.2 587 71.9
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 2.6e-240 835.5 780 59.4
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 3.2e-238 828.6 691 64.5
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 5.1e-236 821.2 609 68.5
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 8.5e-231 803.9 587 68.0
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 3.3e-227 792.0 586 67.9
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 9.7e-227 790.4 576 68.9
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 5.3e-225 784.6 392 99.0
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 8.5e-223 777.3 520 74.6
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.5e-222 776.5 618 67.8
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 2.5e-222 775.8 602 67.3
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 1.0e-220 770.4 513 75.0
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 2.8e-218 762.3 655 64.1
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 4.7e-213 745.0 733 57.2
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 2.2e-207 726.1 573 67.5
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.1e-206 723.8 528 67.4
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 9.4e-206 720.7 458 78.6
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 7.7e-200 701.0 598 58.0
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 4.3e-198 695.3 602 63.3
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 1.0e-196 690.6 555 62.2
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 2.2e-194 682.9 454 75.1
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 2.9e-194 682.6 560 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.1e-193 680.6 577 58.8
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 4.1e-185 652.1 451 72.7
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 1.2e-147 527.7 386 68.9
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 7.9e-136 488.4 334 72.5
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 5.9e-131 472.2 287 81.9
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 2.2e-130 470.3 270 80.0
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 5.1e-127 459.1 309 74.1
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 9.7e-126 454.9 565 45.5
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.7e-109 401.0 385 58.7
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.4e-95 354.8 259 72.2
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.3e-93 348.2 274 64.6
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 4.1e-92 343.2 251 68.5
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 4.9e-85 319.7 188 82.4
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 9.2e-76 288.9 445 38.4
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 2.5e-73 280.8 217 69.1
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 3.5e-67 260.4 180 73.9
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.1e-55 222.2 133 82.7
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.8e-55 221.5 108 91.7
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.7e-51 207.6 377 36.6
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.2e-48 198.7 137 72.3
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 6.2e-48 196.4 187 58.8
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.8e-37 160.6 103 67.0
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 7.9e-35 152.9 183 55.2
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 3.0e-34 151.0 153 59.5
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 4.6e-27 127.1 267 31.1
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.4e-23 115.5 166 49.4
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 3.1e-23 114.4 66 74.2
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 3.4e-06 57.8 55 60.0


User provided reference genes

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