Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 8.5e-66 253.4 121 100.0
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 1.6e-64 249.2 119 98.3
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 2.1e-64 248.8 119 98.3
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 4.7e-64 247.7 119 98.3
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 1.0e-63 246.5 119 97.5
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 1.0e-63 246.5 119 96.6
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 1.0e-63 246.5 119 96.6
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 1.4e-63 246.1 119 95.8
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 3.9e-63 244.6 119 95.0
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 5.2e-63 244.2 119 95.8
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 6.7e-63 243.8 119 95.8
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 1.1e-62 243.0 119 95.0
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 1.1e-62 243.0 119 95.0
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.1e-62 243.0 119 95.8
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.1e-62 243.0 119 95.8
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 1.5e-62 242.7 119 95.0
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 4.4e-62 241.1 119 93.3
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 4.4e-62 241.1 119 93.3
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.4e-62 241.1 119 95.0
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.4e-62 241.1 119 95.0
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 2.2e-61 238.8 119 93.3
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 2.8e-61 238.4 118 94.9
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 6.3e-61 237.3 120 90.8
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 8.2e-61 236.9 120 90.0
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 8.2e-61 236.9 120 90.8
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 8.2e-61 236.9 120 90.8
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 8.2e-61 236.9 120 90.8
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 8.2e-61 236.9 120 90.0
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 1.1e-60 236.5 120 88.3
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 1.1e-60 236.5 120 90.0
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 1.8e-60 235.7 120 90.0
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 3.1e-60 235.0 120 89.2
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 3.1e-60 235.0 120 89.2
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 4.1e-60 234.6 120 89.2
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 4.1e-60 234.6 120 87.5
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 4.1e-60 234.6 120 88.3
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 4.1e-60 234.6 120 87.5
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 5.3e-60 234.2 120 88.3
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 7.0e-60 233.8 120 89.2
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 7.0e-60 233.8 120 89.2
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 9.1e-60 233.4 120 88.3
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 9.1e-60 233.4 120 87.5
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 1.2e-59 233.0 120 87.5
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 1.2e-59 233.0 120 88.3
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 1.2e-59 233.0 120 88.3
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 1.2e-59 233.0 112 97.3
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 2.0e-59 232.3 120 87.5
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.0e-59 232.3 120 87.5
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 2.0e-59 232.3 120 87.5
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 2.0e-59 232.3 120 86.7
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 2.6e-59 231.9 120 89.2
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 2.6e-59 231.9 120 86.7
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.6e-59 231.9 120 87.5
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 2.6e-59 231.9 120 85.8
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 4.5e-59 231.1 120 85.8
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 4.5e-59 231.1 120 87.5
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 4.5e-59 231.1 120 87.5
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 5.9e-59 230.7 120 88.3
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 5.9e-59 230.7 120 88.3
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 5.9e-59 230.7 120 87.5
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 7.7e-59 230.3 120 88.3
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 7.7e-59 230.3 120 88.3
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 7.7e-59 230.3 120 87.5
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 1.0e-58 229.9 113 95.6
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 1.0e-58 229.9 120 87.5
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 86.7
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 1.3e-58 229.6 120 87.5
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 1.7e-58 229.2 120 86.7
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.7e-58 229.2 120 85.8
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 1.7e-58 229.2 120 85.8
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 1.7e-58 229.2 120 87.5
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 2.2e-58 228.8 120 87.5
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 2.2e-58 228.8 120 85.8
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 2.9e-58 228.4 120 84.2
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 3.8e-58 228.0 120 85.8
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 3.8e-58 228.0 120 86.7
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 3.8e-58 228.0 120 85.8
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 5.0e-58 227.6 120 87.5
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 5.0e-58 227.6 120 86.7
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 5.0e-58 227.6 120 86.7
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 6.5e-58 227.3 120 85.8
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 6.5e-58 227.3 120 85.8
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 8.5e-58 226.9 120 85.8
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 1.1e-57 226.5 120 84.2
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.1e-57 226.5 120 86.7
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.1e-57 226.5 120 86.7
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 1.5e-57 226.1 119 86.6
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 1.5e-57 226.1 117 88.0
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 1.9e-57 225.7 120 87.5
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 1.9e-57 225.7 120 85.0
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 2.5e-57 225.3 120 87.5
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 2.5e-57 225.3 120 87.5
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 2.5e-57 225.3 120 85.8
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 3.2e-57 224.9 119 85.7
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 4.2e-57 224.6 119 85.7
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 4.2e-57 224.6 118 86.4
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 4.2e-57 224.6 141 76.6
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 5.5e-57 224.2 120 86.7
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 5.5e-57 224.2 120 87.5
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 7.2e-57 223.8 120 86.7
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 7.2e-57 223.8 120 86.7
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.6e-56 222.6 120 86.7
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 2.1e-56 222.2 120 85.8
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 2.1e-56 222.2 120 85.8
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 2.1e-56 222.2 120 85.0
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 2.1e-56 222.2 119 86.6
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 2.7e-56 221.9 120 85.8
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 3.6e-56 221.5 120 85.0
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 4.7e-56 221.1 117 86.3
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 6.1e-56 220.7 120 85.0
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 8.0e-56 220.3 120 84.2
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 8.0e-56 220.3 120 85.8
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 1.0e-55 219.9 118 83.9
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 1.4e-55 219.5 120 84.2
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 1.4e-55 219.5 133 78.9
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 1.4e-55 219.5 134 79.1
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 2.3e-55 218.8 139 75.5
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 2.3e-55 218.8 119 84.0
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 5.2e-55 217.6 120 82.5
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 6.7e-55 217.2 120 84.2
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 6.7e-55 217.2 119 83.2
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 8.8e-55 216.9 164 65.9
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 1.5e-54 216.1 120 83.3
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 1.5e-54 216.1 119 82.4
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 3.3e-54 214.9 113 85.8
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 1.3e-53 213.0 120 81.7
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 4.8e-53 211.1 120 79.2
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 8.2e-53 210.3 114 86.0
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 1.4e-52 209.5 116 81.0
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 5.3e-52 207.6 119 79.0
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 2.0e-51 205.7 143 72.0
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 7.7e-51 203.8 120 80.0
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 1.9e-49 199.1 119 73.9
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 2.0e-46 189.1 120 68.3
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 2.6e-46 188.7 112 75.9
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 1.6e-43 179.5 119 66.4
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 1.6e-43 179.5 119 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 3.8e-42 174.9 119 67.2
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 5.0e-42 174.5 96 85.4
CDE04G2432 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 4.7e-40 167.9 99 82.8
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 6.1e-40 167.5 120 69.2
SalBow6G7052 Salvia bowleyana HOM05D003434 ORTHO05D004465 7.0e-36 154.1 122 63.1
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 4.5e-35 151.4 128 57.0
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 2.5e-33 145.6 118 54.2
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 1.2e-32 143.3 114 62.3
DCAR_019542 Daucus carota HOM05D003434 ORTHO05D004465 2.3e-31 139.0 75 85.3
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 5.2e-31 137.9 120 52.5
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 1.7e-29 132.9 71 80.3
CsaV3_7G022570 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.2e-29 132.5 76 81.6
CsaV3_2G014790 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.9e-29 132.1 76 81.6
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 7.0e-28 127.5 116 50.9
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 6.6e-26 120.9 61 85.2
TPR.G10880 Trifolium pratense HOM05D003434 ORTHO05D004465 5.8e-22 107.8 58 91.4
CBR_g29800 Chara braunii HOM05D003434 ORTHO05D004465 1.0e-18 97.1 75 56.0
SEGI_35123 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 5.0e-18 94.7 49 85.7
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.5e-17 93.2 49 85.7
Hund31009 Selenicereus undatus HOM05D003434 ORTHO05D023136 5.6e-17 91.3 49 85.7
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 3.6e-16 88.6 98 52.0
Hund24220 Selenicereus undatus HOM05D003434 ORTHO05D004465 1.4e-15 86.7 49 81.6
CsaV3_5G020630 Cucumis sativus L. HOM05D003434 ORTHO05D004465 4.0e-15 85.1 42 85.7
MELO3C034411.2 Cucumis melo HOM05D003434 ORTHO05D000610 4.9e-13 78.2 78 52.6
SEGI_41466 Sequoiadendron giganteum HOM05D003434 ORTHO05D000001 1.1e-12 77.0 48 70.8
MELO3C030248.2 Cucumis melo HOM05D003434 ORTHO05D000610 1.7e-10 69.7 41 73.2
TPR.G10879 Trifolium pratense HOM05D003434 ORTHO05D412228 4.0e-07 58.5 48 62.5
Os01g0148400 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D300586 5.2e-07 58.2 119 30.3
Zm00001eb217510 Zea mays HOM05D000911 ORTHO05D445770 1.5e-06 56.6 71 45.1


User provided reference genes

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