Gene: AT1G52930
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G52930
- Transcript Identifier AT1G52930.1
- Gene Type Coding gene
- Location Chr1 : 19711261-19713103 : positive
Gene Family Information
- ID HOM05D003434
- #Genes/#Species 199/97
- Phylogenetic origin
- ID ORTHO05D004465
- #Genes/#Species 180/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G52930.1
- uniprot Q9C928
Descriptions
- Description Ribosomal RNA processing Brix domain protein
- Computational description Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT3G15460.1); Has 418 Blast hits to 416 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000027 | IMP IBA | Gene Ontology | ribosomal large subunit assembly | 1 2 |
| GO:0006364 | IEA | GOA Database | rRNA processing | |
| GO:0006364 | IMP | Gene Ontology | rRNA processing | 2 |
| GO:0006364 | IEA | InterPro | rRNA processing | |
| GO:0042254 | IEA | GOA Database | ribosome biogenesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019843 | IEA | Gene Ontology | rRNA binding | |
| GO:0019843 | IEA | InterPro | rRNA binding | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005730 | IEA | GOA Database | nucleolus | |
| GO:0005730 | IDA IBA | Gene Ontology | nucleolus | 1 2 |
| GO:0005829 | IDA | GOA Database | cytosol |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.1.8.1 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.assembly factor (BRX1) |