Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.9e-117 425.2 216 100.0
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 3.0e-98 362.1 237 83.5
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.3e-90 335.9 237 79.3
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.8e-87 326.2 238 75.2
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 8.5e-85 317.4 238 71.8
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.2e-84 315.1 236 74.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.1e-75 286.2 220 70.5
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.7e-72 275.4 231 67.1
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.3e-72 274.2 242 62.4
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.0e-70 269.6 218 65.1
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 4.6e-70 268.5 194 71.6
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 7.8e-70 267.7 227 67.0
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.3e-69 266.9 194 71.6
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.3e-69 266.9 212 66.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.7e-69 266.5 200 69.5
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 6.6e-69 264.6 206 68.0
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 6.6e-69 264.6 229 65.5
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.5e-68 262.7 250 61.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.5e-68 262.7 236 61.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.5e-68 262.7 236 60.2
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 2.5e-68 262.7 244 59.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.3e-68 261.9 174 74.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 4.3e-68 261.9 234 61.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.3e-68 261.9 181 73.5
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 5.6e-68 261.5 237 62.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 5.6e-68 261.5 238 61.8
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 7.3e-68 261.2 238 60.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 7.3e-68 261.2 181 71.8
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 7.3e-68 261.2 234 61.5
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 7.3e-68 261.2 182 73.6
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 9.5e-68 260.8 235 61.7
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 9.5e-68 260.8 235 61.7
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.2e-67 260.4 193 69.4
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.2e-67 260.4 232 62.1
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.6e-67 260.0 234 61.1
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.6e-67 260.0 222 64.0
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 2.1e-67 259.6 222 64.0
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.8e-67 259.2 219 62.6
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 2.8e-67 259.2 177 75.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.8e-67 259.2 240 61.2
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.6e-67 258.8 220 63.6
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.7e-67 258.5 237 60.3
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 6.2e-67 258.1 229 62.4
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.2e-67 258.1 237 59.5
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.2e-67 258.1 176 71.6
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 6.2e-67 258.1 235 60.4
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.0e-67 257.7 237 62.4
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 8.0e-67 257.7 177 74.0
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.0e-66 257.3 237 62.0
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.4e-66 256.9 238 60.9
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-66 256.9 218 64.7
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.4e-66 256.9 218 64.7
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.4e-66 256.9 242 59.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.8e-66 256.5 227 62.6
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.3e-66 256.1 241 59.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 3.1e-66 255.8 202 66.3
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.2e-66 255.0 216 63.9
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 5.2e-66 255.0 236 61.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 8.9e-66 254.2 182 69.8
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 8.9e-66 254.2 199 67.8
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.2e-65 253.8 187 70.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.2e-65 253.8 224 62.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.2e-65 253.8 237 61.2
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.2e-65 253.8 186 71.0
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.4e-65 251.9 190 68.9
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 4.4e-65 251.9 182 71.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.4e-65 251.9 215 63.7
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 5.8e-65 251.5 199 67.8
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 7.5e-65 251.1 191 68.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 7.5e-65 251.1 199 68.3
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 9.8e-65 250.8 210 67.1
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.3e-64 250.4 178 71.3
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.7e-64 250.0 178 70.2
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 2.2e-64 249.6 238 58.0
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 2.2e-64 249.6 238 58.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.2e-64 249.6 190 68.4
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.7e-64 248.8 191 68.1
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.7e-64 248.8 222 61.3
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.9e-64 248.4 247 59.5
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 4.9e-64 248.4 241 58.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 8.3e-64 247.7 244 56.6
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 8.3e-64 247.7 195 66.7
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 8.3e-64 247.7 183 68.9
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.1e-63 247.3 222 60.4
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.9e-63 246.5 242 58.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.9e-63 246.5 237 58.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.9e-63 246.5 184 70.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.2e-63 245.7 242 58.3
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 5.4e-63 245.0 241 59.8
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 9.2e-63 244.2 230 59.6
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.2e-62 243.8 177 68.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.2e-62 243.8 240 57.9
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.6e-62 243.4 240 58.8
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.6e-62 243.4 239 58.6
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 2.0e-62 243.0 238 57.6
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 2.0e-62 243.0 238 57.6
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 2.7e-62 242.7 240 56.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.7e-62 242.7 241 59.8
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 2.7e-62 242.7 241 58.1
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.7e-62 242.7 242 57.9
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.6e-62 241.9 229 59.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 6.0e-62 241.5 178 67.4
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 7.8e-62 241.1 237 57.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 3.0e-61 239.2 224 57.1
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 3.9e-61 238.8 243 59.3
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.0e-61 238.4 239 59.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.0e-61 238.4 200 63.0
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 5.0e-61 238.4 198 62.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 8.6e-61 237.7 241 55.6
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.9e-60 236.5 178 68.0
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.0e-57 226.5 260 53.1
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 9.8e-57 224.2 122 88.5
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 2.9e-56 222.6 174 62.1
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.1e-52 210.7 169 64.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.3e-52 209.1 159 62.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.1e-51 206.5 165 60.6
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-50 204.1 143 69.9
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.5e-49 200.3 203 55.2
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.6e-49 199.5 177 61.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 2.6e-49 199.5 226 53.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.1e-47 194.1 164 70.7
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.0e-41 173.3 112 78.6
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.2e-38 164.1 206 48.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 6.0e-38 161.8 104 76.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 7.8e-38 161.4 104 75.0
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 6.9e-34 148.3 78 96.2
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.9e-31 140.2 166 50.0
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.4e-31 139.8 78 87.2
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.2e-30 137.5 116 62.1
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 6.0e-30 135.2 75 89.3
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.1e-29 132.1 165 48.5
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.6e-27 127.1 170 46.5
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 9.0e-26 121.3 71 84.5
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 7.6e-25 118.2 133 51.1
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 4.9e-24 115.5 101 59.4
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 6.0e-22 108.6 153 35.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.3e-21 106.7 77 71.4
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.1e-21 105.5 105 53.3
Medtr7g053480 Medicago truncatula HOM05D059104 ORTHO05D006107 1.1e-20 104.4 105 64.8
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-14 83.6 49 79.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.9e-13 79.3 92 51.1
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-08 64.3 38 76.3
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.5e-08 62.0 32 81.2
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 7.9e-06 55.1 55 45.5


User provided reference genes

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