Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 4.3e-231 804.3 403 100.0
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 2.1e-206 722.2 409 88.8
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 7.2e-194 680.6 409 82.4
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 4.6e-193 677.9 409 83.4
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 1.7e-182 642.9 408 77.9
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 8.2e-182 640.6 409 78.5
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 7.0e-173 610.9 358 85.8
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 5.0e-155 551.6 408 66.4
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 1.5e-154 550.1 409 66.0
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 2.9e-150 535.8 409 64.5
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 1.0e-147 527.3 409 63.6
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 2.3e-147 526.2 407 64.9
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 6.8e-144 514.6 409 62.8
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 2.6e-143 512.7 409 62.3
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 4.4e-143 511.9 409 63.1
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.4e-141 506.9 408 63.5
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 9.2e-141 504.2 403 63.3
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 4.6e-140 501.9 405 59.0
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 6.0e-140 501.5 409 61.1
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 7.8e-140 501.1 405 60.0
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 5.0e-139 498.4 412 62.6
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 5.0e-139 498.4 409 60.6
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 6.6e-139 498.0 405 59.5
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 8.6e-139 497.7 409 60.9
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 8.6e-139 497.7 405 59.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 1.1e-138 497.3 406 61.8
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 9.5e-138 494.2 407 60.9
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 3.6e-137 492.3 409 60.6
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-136 490.0 412 64.3
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 8.9e-136 487.6 409 59.7
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 2.2e-134 483.0 411 58.6
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.9e-133 479.9 409 59.4
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 5.4e-133 478.4 410 58.8
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 1.6e-132 476.9 409 59.2
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 2.7e-132 476.1 412 59.5
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.5e-132 475.7 411 58.6
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 3.5e-132 475.7 405 59.0
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 4.6e-132 475.3 411 58.4
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.3e-131 473.0 411 58.2
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.6e-129 466.8 421 57.2
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 2.0e-127 459.9 412 57.5
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 3.4e-127 459.1 380 60.0
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 6.4e-126 454.9 406 57.4
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 7.8e-124 448.0 406 56.4
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 6.6e-123 444.9 409 54.8
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 2.5e-122 443.0 394 58.1
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 9.6e-122 441.0 403 55.1
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 3.6e-121 439.1 408 54.2
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 2.4e-120 436.4 296 76.7
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 3.1e-120 436.0 380 57.6
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 1.7e-118 430.3 441 51.0
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 4.9e-118 428.7 407 55.0
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 1.1e-117 427.6 407 53.8
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 1.4e-117 427.2 410 52.9
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 9.3e-117 424.5 407 53.8
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 3.5e-116 422.5 407 53.3
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 7.8e-116 421.4 407 52.8
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 2.3e-115 419.9 412 52.4
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 8.7e-115 417.9 407 53.6
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 1.5e-114 417.2 407 53.6
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 1.3e-113 414.1 408 51.2
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 1.1e-112 411.0 365 57.0
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 6.9e-112 408.3 407 52.6
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 6.9e-112 408.3 407 52.6
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 9.0e-112 407.9 350 58.9
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 1.5e-111 407.1 407 52.3
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 7.6e-111 404.8 418 51.2
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 2.2e-110 403.3 411 53.3
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 6.4e-110 401.7 414 50.7
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 6.4e-110 401.7 379 55.7
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 1.2e-108 397.5 412 48.5
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 3.5e-108 396.0 407 51.4
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 4.2e-101 372.5 355 54.6
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 8.7e-99 364.8 368 53.8
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 5.6e-98 362.1 376 50.5
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.5e-90 337.4 410 44.9
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 3.7e-89 332.8 329 56.5
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 3.1e-88 329.7 299 58.2
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 1.1e-85 321.2 267 61.0
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 2.3e-83 313.5 361 46.8
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 9.1e-80 301.6 268 57.5
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 2.9e-78 296.6 411 39.9
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 9.4e-77 291.6 402 38.6
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 1.2e-68 264.6 258 53.5
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.7e-68 263.5 334 42.8
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 4.4e-66 256.1 287 49.1
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 4.8e-65 252.7 267 53.2
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.1e-64 251.5 410 37.1
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 4.1e-64 249.6 412 35.9
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 5.9e-55 219.2 408 35.3
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.3e-54 218.0 204 52.9
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 1.3e-54 218.0 233 51.9
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.3e-49 201.4 241 48.1
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 5.5e-45 186.0 229 47.2
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.6e-44 184.5 246 45.1
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 2.3e-43 180.6 188 52.1
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 5.7e-42 176.0 186 54.3
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 1.0e-35 155.2 113 65.5
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 1.3e-33 148.3 89 80.9
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 1.6e-31 141.4 109 67.9
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 1.7e-30 137.9 73 90.4
TPR.G5917 Trifolium pratense HOM05D001734 ORTHO05D003483 1.6e-28 131.3 67 97.0
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 2.3e-27 127.5 66 97.0
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 2.2e-25 120.9 287 32.1
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-21 107.8 234 32.9
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 1.1e-11 75.5 69 52.2
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 2.2e-09 67.8 169 30.8
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 1.9e-08 64.7 75 42.7
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 3.9e-06 57.0 72 47.2


User provided reference genes

Program Settings