Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.3e-207 726.1 352 100.0
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.0e-187 659.1 350 90.0
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.8e-186 654.4 352 88.9
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 3.3e-179 631.7 363 85.4
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 5.9e-176 620.9 352 85.2
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.7e-175 619.4 352 84.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.9e-174 615.9 352 82.7
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 4.2e-174 614.8 352 84.1
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.0e-173 610.5 351 82.1
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.2e-172 607.8 351 82.1
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.7e-170 602.8 352 82.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 9.4e-166 587.0 340 83.2
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.5e-147 526.6 352 71.3
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.9e-146 522.3 363 70.0
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.3e-143 513.5 358 68.7
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.9e-143 512.3 357 68.6
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.3e-142 508.4 359 65.7
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.6e-141 506.5 360 67.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.1e-140 502.3 348 69.5
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-139 500.4 353 68.6
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.5e-139 500.0 362 68.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.3e-138 496.9 362 66.6
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.4e-137 492.7 365 63.3
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.0e-137 491.1 359 65.2
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 9.2e-137 490.7 364 65.1
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 3.5e-136 488.8 362 65.7
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 3.5e-136 488.8 362 65.5
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 6.0e-136 488.0 372 64.8
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.0e-135 485.7 359 64.1
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.9e-134 483.0 362 64.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.9e-134 483.0 362 65.7
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.9e-134 483.0 366 63.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.6e-134 481.5 361 63.4
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 5.6e-134 481.5 362 63.5
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.5e-134 480.7 362 66.0
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.5e-134 480.7 362 65.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.2e-133 480.3 366 66.4
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.4e-132 476.9 359 63.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 5.2e-132 474.9 358 64.2
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 6.8e-132 474.6 359 65.7
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 8.9e-132 474.2 359 63.5
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 8.9e-132 474.2 347 64.8
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.2e-131 473.8 321 68.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.6e-131 472.6 357 65.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 4.4e-131 471.9 343 65.9
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.8e-131 471.5 356 65.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 7.5e-131 471.1 340 64.4
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 8.3e-130 467.6 355 62.5
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 8.3e-130 467.6 359 61.3
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.9e-129 466.5 358 64.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 9.2e-129 464.2 363 62.8
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 9.2e-129 464.2 344 63.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.6e-128 463.4 361 62.3
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.7e-128 462.6 344 63.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-127 460.3 341 62.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.3e-127 460.3 347 62.2
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 2.3e-127 459.5 342 62.0
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 5.1e-127 458.4 338 65.4
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 6.6e-127 458.0 367 60.8
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.5e-126 456.8 344 62.2
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.5e-126 456.1 342 61.4
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.3e-126 455.7 353 60.6
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 7.3e-126 454.5 367 60.8
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.6e-125 453.4 343 61.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 3.6e-125 452.2 342 62.3
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 3.6e-125 452.2 342 62.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 6.2e-125 451.4 407 54.1
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 8.1e-125 451.1 356 62.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.1e-125 451.1 353 61.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.1e-125 451.1 353 61.5
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 4.0e-124 448.7 344 60.2
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.8e-124 448.0 345 59.1
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.2e-123 447.2 347 59.7
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.6e-123 446.0 432 52.1
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 3.4e-123 445.7 345 60.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 4.4e-123 445.3 340 61.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 4.4e-123 445.3 356 59.6
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 5.8e-123 444.9 340 61.8
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 5.8e-123 444.9 485 50.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.4e-121 440.3 339 61.1
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.9e-121 439.9 353 61.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.2e-120 437.2 345 59.4
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 3.5e-120 435.6 361 58.4
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-119 433.7 363 59.8
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.3e-119 433.7 342 61.7
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.5e-118 429.5 358 60.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.8e-117 426.0 322 64.9
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 8.1e-117 424.5 431 52.7
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 5.2e-116 421.8 347 60.8
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 3.4e-115 419.1 384 54.2
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.9e-114 416.0 306 66.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.4e-114 414.5 353 57.5
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.9e-113 413.3 355 59.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.3e-111 406.4 342 58.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 9.6e-110 401.0 357 52.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.1e-108 397.5 265 69.4
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.0e-108 395.6 359 55.2
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 5.3e-108 395.2 287 64.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.5e-107 393.7 368 55.2
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.4e-105 387.1 355 51.5
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 2.1e-101 373.2 349 55.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.4e-100 369.8 391 48.1
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.6e-99 364.8 358 54.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.0e-95 352.8 319 56.7
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.3e-92 342.0 244 66.8
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 5.3e-92 342.0 354 50.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.7e-90 337.0 425 42.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.6e-88 330.5 291 56.4
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.5e-86 323.9 206 73.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.4e-84 317.4 209 71.3
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 2.2e-82 310.1 419 40.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 4.2e-81 305.8 292 53.8
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.8e-77 293.1 154 82.5
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 6.3e-77 292.0 346 46.2
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 6.9e-76 288.5 379 40.6
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 4.5e-75 285.8 355 42.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-67 261.2 226 58.4
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.6e-64 250.8 134 84.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.0e-63 248.1 127 85.0
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 7.0e-52 208.8 257 44.7
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 7.0e-52 208.8 257 44.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 4.0e-47 193.0 190 52.6
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.0e-47 193.0 190 52.6
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.9e-42 176.8 127 59.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 4.2e-41 172.9 185 51.9
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.0e-39 168.3 194 46.9
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.1e-36 156.8 83 83.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.4e-30 136.3 77 80.5
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.5e-25 120.6 135 48.9
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-21 107.8 137 46.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 3.9e-18 96.7 199 31.2
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.3e-15 87.4 121 41.3
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-10 71.2 108 44.4


User provided reference genes

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