Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 2.8e-60 235.0 108 100.0
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 3.9e-46 188.0 110 75.5
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 6.2e-44 180.6 110 74.5
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 6.2e-44 180.6 110 74.5
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 9.0e-43 176.8 116 69.8
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.4e-40 169.5 116 64.7
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-40 169.1 110 67.3
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-40 169.1 110 67.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 4.6e-39 164.5 110 63.6
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 8.2e-36 153.7 110 62.7
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.1e-35 151.8 110 60.0
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.1e-35 151.8 110 60.9
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 4.1e-35 151.4 110 62.7
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 9.0e-35 150.2 111 62.2
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.4e-34 148.3 111 62.2
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 3.4e-34 148.3 110 58.2
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 7.6e-34 147.1 110 58.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.7e-33 146.0 110 60.9
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 5.0e-33 144.4 110 56.4
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 5.0e-33 144.4 110 59.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.4e-32 142.9 111 58.6
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 2.5e-32 142.1 110 57.3
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.2e-31 139.8 111 57.7
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.2e-31 139.8 111 57.7
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.2e-31 139.8 111 57.7
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.2e-31 139.8 111 57.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 1.2e-31 139.8 110 54.5
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.6e-31 139.4 110 56.4
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.6e-31 139.4 110 56.4
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.6e-31 138.3 111 58.6
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.4e-30 136.3 110 53.6
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.1e-29 133.3 111 57.7
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.5e-29 132.9 111 56.8
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 1.9e-29 132.5 107 55.1
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 3.3e-29 131.7 111 54.1
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 4.3e-29 131.3 107 54.2
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 4.3e-29 131.3 110 52.7
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 4.3e-29 131.3 110 51.8
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 4.3e-29 131.3 110 51.8
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 4.3e-29 131.3 110 51.8
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 5.7e-29 131.0 107 53.3
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 7.4e-29 130.6 93 58.1
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 7.4e-29 130.6 111 53.2
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.3e-28 129.8 107 53.3
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.7e-28 129.4 111 53.2
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.2e-28 129.0 110 52.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.2e-28 129.0 110 53.6
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 3.7e-28 128.3 111 56.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 3.7e-28 128.3 110 50.0
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 4.8e-28 127.9 102 54.9
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 6.3e-28 127.5 107 53.3
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.3e-28 127.5 111 54.1
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 6.3e-28 127.5 110 53.6
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 8.2e-28 127.1 107 53.3
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 8.2e-28 127.1 107 52.3
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.1e-27 126.7 110 51.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.4e-27 126.3 107 52.3
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 53.2
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 53.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 53.2
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.8e-27 125.9 107 52.3
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.8e-27 125.9 97 58.8
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.8e-27 125.9 111 53.2
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.8e-27 125.9 107 52.3
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 3.1e-27 125.2 107 50.5
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 3.1e-27 125.2 107 50.5
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 6.9e-27 124.0 111 51.4
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 6.9e-27 124.0 111 54.1
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 9.1e-27 123.6 107 49.5
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 50.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 107 49.5
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 1.5e-26 122.9 111 51.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 2.0e-26 122.5 113 54.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 2.6e-26 122.1 107 49.5
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 4.5e-26 121.3 107 48.6
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.9e-26 120.9 111 51.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 5.9e-26 120.9 110 50.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 5.9e-26 120.9 107 50.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.3e-25 119.8 110 49.1
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 2.2e-25 119.0 112 52.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.2e-25 119.0 111 50.5
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 2.2e-25 119.0 111 49.5
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.9e-25 118.6 111 55.0
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 5.0e-25 117.9 94 57.4
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.9e-24 115.9 110 46.4
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.2e-23 113.2 108 45.4
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 7.9e-23 110.5 110 52.7
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.8e-22 109.4 113 46.9
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 2.0e-21 105.9 109 46.8
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.6e-21 105.5 111 45.0
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 5.7e-21 104.4 111 49.5
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 5.7e-21 104.4 111 48.6
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 5.7e-21 104.4 111 48.6
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 5.7e-21 104.4 111 48.6
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.7e-20 102.8 86 53.5
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 3.7e-20 101.7 85 52.9
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 3.7e-20 101.7 111 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 4.8e-20 101.3 111 42.3
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 5.3e-19 97.8 80 57.5
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.2e-18 96.7 137 42.3
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.0e-18 95.9 72 56.9
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 4.5e-18 94.7 109 39.4
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.0e-17 93.6 68 63.2
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.7e-17 92.8 109 43.1
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.1e-16 90.1 84 48.8
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.9e-16 89.4 70 54.3
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 1.9e-16 89.4 111 37.8
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 4.2e-16 88.2 111 40.5
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.1e-15 85.9 108 37.0
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.0e-14 83.6 68 55.9
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 1.8e-14 82.8 89 39.3
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 5.2e-14 81.3 68 52.9
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 5.7e-13 77.8 69 49.3
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 9.7e-13 77.0 111 34.2
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.3e-12 76.6 68 54.4
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.4e-11 73.2 111 35.1
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 7.7e-10 67.4 55 56.4
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 1.9e-08 62.8 79 35.4
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.8e-06 56.2 116 30.2
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 8.8e-06 53.9 128 27.3


User provided reference genes

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