Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40436 Trifolium pratense HOM05D002535 ORTHO05D025122 9.7e-40 166.4 86 100.0
TPR.G12122 Trifolium pratense HOM05D002535 ORTHO05D008858 5.3e-30 134.0 76 93.4
Medtr4g088920 Medicago truncatula HOM05D002535 ORTHO05D008858 6.7e-25 117.1 76 77.6
Psat7g112600 Pisum sativum HOM05D002535 ORTHO05D008858 3.1e-22 108.2 77 77.9
Phvul.002G228200 Phaseolus vulgaris HOM05D002535 ORTHO05D008858 2.9e-20 101.7 76 75.0
Glyma.07G195700 Glycine max HOM05D002535 ORTHO05D008858 1.5e-19 99.4 76 69.7
VMungo0251G2893 Vigna mungo HOM05D002535 ORTHO05D008858 3.2e-19 98.2 76 72.4
Lj4g0015787 Lotus japonicus HOM05D002535 ORTHO05D008858 5.5e-19 97.4 76 68.4
Lalb_Chr09g0327621 Lupinus albus HOM05D002535 ORTHO05D008858 1.3e-15 86.3 76 64.5
ClCG03G005960 Citrullus lanatus HOM05D002535 ORTHO05D008858 1.7e-12 75.9 76 53.9
arahy.Tifrunner.gnm1.ann1.UAEH3Q Arachis hypogaea HOM05D002535 ORTHO05D008858 2.3e-12 75.5 76 55.3
arahy.Tifrunner.gnm1.ann1.B9F9XG Arachis hypogaea HOM05D002535 ORTHO05D008858 2.9e-12 75.1 76 53.9
DCAR_028087 Daucus carota HOM05D002535 ORTHO05D008858 6.6e-12 73.9 82 50.0
Rhsim13G0176900 Rhododendron simsii HOM05D002535 ORTHO05D008858 1.1e-11 73.2 77 54.5
Nn1g04049 Nelumbo nucifera HOM05D002535 ORTHO05D008858 2.5e-11 72.0 76 53.9
MELO3C002594.2 Cucumis melo HOM05D002535 ORTHO05D008858 3.6e-10 68.2 61 57.4
Migut.M01151 Erythranthe guttata HOM05D002535 ORTHO05D008858 3.6e-10 68.2 76 51.3
TAR624G1243 Trochodendron aralioides HOM05D002535 ORTHO05D008858 3.6e-10 68.2 76 50.0
Sed0021234 Sechium edule HOM05D002535 ORTHO05D008858 4.7e-10 67.8 76 48.7
Hma1.2p1_0881F.1_g232050 Hydrangea macrophylla HOM05D002535 ORTHO05D008858 8.0e-10 67.0 76 47.4
Hma1.2p1_0881F.1_g232060 Hydrangea macrophylla HOM05D002535 ORTHO05D008858 8.0e-10 67.0 76 47.4
SGA_v2.0_scaffold100G29671 Striga asiatica HOM05D002535 ORTHO05D008858 8.0e-10 67.0 76 48.7
CSS0043844 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D008858 1.0e-09 66.6 62 56.5
Dinv07549 Davidia involucrata HOM05D002535 ORTHO05D008858 1.4e-09 66.2 61 55.7
unitig_32.g10980 Utricularia gibba HOM05D002535 ORTHO05D008858 1.8e-09 65.9 71 50.7
CAN.G1164.16 Capsicum annuum HOM05D002535 ORTHO05D008858 3.0e-09 65.1 70 48.6
Manes.17G044100 Manihot esculenta HOM05D002535 ORTHO05D008858 3.0e-09 65.1 60 58.3
FAN16G0286 Fragaria x ananassa HOM05D002535 ORTHO05D008858 4.0e-09 64.7 80 50.0
Aqoxy1G02517 Aquilegia oxysepala HOM05D002535 ORTHO05D008858 6.8e-09 63.9 76 46.1
CiPaw.10G047500 Carya illinoinensis HOM05D002535 ORTHO05D008858 6.8e-09 63.9 77 48.1
Actinidia05620 Actinidia chinensis HOM05D002535 ORTHO05D008858 8.9e-09 63.5 77 48.1
ATR0680G182 Amborella trichopoda HOM05D002535 ORTHO05D008858 8.9e-09 63.5 66 50.0
HanXRQChr16g0517721 Helianthus annuus HOM05D002535 ORTHO05D008858 8.9e-09 63.5 81 43.2
Potri.004G041900 Populus trichocarpa HOM05D002535 ORTHO05D008858 1.2e-08 63.2 60 58.3
TWI38G0664 Tripterygium wilfordii HOM05D002535 ORTHO05D008858 1.2e-08 63.2 83 48.2
SEGI_27553 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 2.0e-08 62.4 64 51.6
SEGI_29257 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 2.0e-08 62.4 64 51.6
MBI18_g16997_MAGBIO Magnolia biondii HOM05D002535 ORTHO05D008858 2.6e-08 62.0 65 52.3
Nitab4.5_0019564g0010 Nicotiana tabacum HOM05D002535 ORTHO05D008858 2.6e-08 62.0 70 47.1
Peaxi162Scf00947g00117 Petunia axillaris HOM05D002535 ORTHO05D008858 2.6e-08 62.0 68 52.9
Haze_06485 Corylus avellana HOM05D002535 ORTHO05D008858 3.4e-08 61.6 80 42.5
Lj2C287G7 Lonicera japonica HOM05D002535 ORTHO05D008858 3.4e-08 61.6 62 53.2
Prupe.4G045200 Prunus persica HOM05D002535 ORTHO05D008858 3.4e-08 61.6 80 47.5
Cc02_g13220 Coffea canephora HOM05D002535 ORTHO05D025122 4.4e-08 61.2 69 49.3
FAN11G0332 Fragaria x ananassa HOM05D002535 ORTHO05D008858 4.4e-08 61.2 80 47.5
Sabra04G0026000 Salix brachista HOM05D002535 ORTHO05D008858 4.4e-08 61.2 60 56.7
FvH4_3g09390 Fragaria vesca HOM05D002535 ORTHO05D008858 5.7e-08 60.8 80 47.5
HPP92_028115 Vanilla planifolia HOM05D002535 ORTHO05D008858 5.7e-08 60.8 76 44.7
CANSAT35G1983 Cannabis sativa HOM05D002535 ORTHO05D008858 7.5e-08 60.5 80 43.8
PSO675G0269 Papaver somniferum HOM05D002535 ORTHO05D008858 7.5e-08 60.5 64 53.1
QL05p039941 Quercus lobata HOM05D002535 ORTHO05D008858 7.5e-08 60.5 84 42.9
MD00G1095300 Malus domestica HOM05D002535 ORTHO05D008858 9.8e-08 60.1 80 46.2
ECA234G1348 Erigeron canadensis HOM05D002535 ORTHO05D008858 1.3e-07 59.7 81 39.5
FAN21G0967 Fragaria x ananassa HOM05D002535 ORTHO05D008858 2.8e-07 58.5 80 46.2
SGA_v2.0_scaffold332G48928 Striga asiatica HOM05D002535 ORTHO05D025122 2.8e-07 58.5 54 53.7
HPP92_020872 Vanilla planifolia HOM05D002535 ORTHO05D008858 2.8e-07 58.5 76 43.4
Cfa000431 Carpinus fangiana HOM05D002535 ORTHO05D008858 3.7e-07 58.2 80 41.2
Oeu005075.2 Olea europaea HOM05D002535 ORTHO05D008858 3.7e-07 58.2 71 45.1
Sopen02g023250 Solanum pennellii HOM05D002535 ORTHO05D008858 4.9e-07 57.8 61 49.2
Solyc02g078390.3 Solanum lycopersicum HOM05D002535 ORTHO05D008858 6.3e-07 57.4 61 49.2
AL2G19710 Arabidopsis lyrata HOM05D002535 ORTHO05D008858 8.3e-07 57.0 66 47.0
Atru.BG.303.p Acer truncatum HOM05D002535 ORTHO05D008858 1.1e-06 56.6 59 52.5
Duzib235G0442 Durio zibethinus HOM05D002535 ORTHO05D008858 1.4e-06 56.2 66 50.0
AT1G65070 Arabidopsis thaliana HOM05D002535 ORTHO05D008858 1.8e-06 55.8 66 48.5
SGA_v2.0_scaffold323G48640 Striga asiatica HOM05D002535 ORTHO05D025122 2.4e-06 55.5 49 55.1
Thecc.06G189600 Theobroma cacao HOM05D002535 ORTHO05D008858 2.4e-06 55.5 66 50.0
Ah.14g089380 Amaranthus hybridus HOM05D002535 ORTHO05D008858 3.1e-06 55.1 62 51.6
CDE09G0049 Ceratophyllum demersum HOM05D002535 ORTHO05D008858 4.1e-06 54.7 68 44.1
Os04g0680700 Oryza sativa ssp. japonica HOM05D002535 ORTHO05D008858 5.4e-06 54.3 64 40.6
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 7.0e-06 53.9 80 43.8


User provided reference genes

Program Settings