Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40158 Trifolium pratense HOM05D001472 ORTHO05D007811 3.1e-72 275.0 136 100.0
TPR.G32117 Trifolium pratense HOM05D001472 ORTHO05D007811 2.2e-62 242.3 166 77.1
Ca_14801_v3 Cicer arietinum L. HOM05D001472 ORTHO05D007811 2.7e-60 235.3 166 74.1
arahy.Tifrunner.gnm1.ann1.NSES8Z Arachis hypogaea HOM05D001472 ORTHO05D007811 3.9e-59 231.5 166 74.1
arahy.Tifrunner.gnm1.ann1.WM6SSU Arachis hypogaea HOM05D001472 ORTHO05D007811 3.9e-59 231.5 166 74.1
Glyma.03G109000 Glycine max HOM05D001472 ORTHO05D007811 5.1e-59 231.1 166 72.9
Lalb_Chr13g0290681 Lupinus albus HOM05D001472 ORTHO05D007811 1.1e-58 229.9 166 72.9
Lj2g0001026 Lotus japonicus HOM05D001472 ORTHO05D007811 1.5e-58 229.6 166 71.7
Medtr8g007295 Medicago truncatula HOM05D001472 ORTHO05D007811 1.5e-58 229.6 166 74.1
Psat0s3030g0040 Pisum sativum HOM05D001472 ORTHO05D007811 1.9e-58 229.2 166 71.1
VMungo0331G0364 Vigna mungo HOM05D001472 ORTHO05D007811 1.5e-55 219.5 166 69.9
CiPaw.13G177500 Carya illinoinensis HOM05D001472 ORTHO05D007811 4.9e-54 214.5 166 67.5
ECA233G2592 Erigeron canadensis HOM05D001472 ORTHO05D007811 8.4e-54 213.8 166 67.5
QL01p003604 Quercus lobata HOM05D001472 ORTHO05D007811 1.1e-53 213.4 166 67.5
Phvul.010G046400 Phaseolus vulgaris HOM05D001472 ORTHO05D007811 2.4e-53 212.2 166 67.5
Atru.chr3.2103 Acer truncatum HOM05D001472 ORTHO05D007811 3.2e-53 211.8 166 67.5
Atru.chr3.2118 Acer truncatum HOM05D001472 ORTHO05D007811 3.2e-53 211.8 166 67.5
Haze_22937 Corylus avellana HOM05D001472 ORTHO05D007811 3.2e-53 211.8 166 66.9
Dinv13475 Davidia involucrata HOM05D001472 ORTHO05D007811 4.2e-53 211.5 166 67.5
Lsat_1_v5_gn_6_52060 Lactuca sativa HOM05D001472 ORTHO05D007811 9.3e-53 210.3 166 67.5
Ciclev10014735m.g Citrus clementina HOM05D001472 ORTHO05D007811 1.2e-52 209.9 166 66.3
Cfa009558 Carpinus fangiana HOM05D001472 ORTHO05D007811 1.6e-52 209.5 166 66.3
MSTRG.12798 Avicennia marina HOM05D001472 ORTHO05D007811 2.1e-52 209.1 166 65.7
FvH4_3g45770 Fragaria vesca HOM05D001472 ORTHO05D007811 2.1e-52 209.1 166 68.1
FAN11G2456 Fragaria x ananassa HOM05D001472 ORTHO05D007811 2.1e-52 209.1 166 68.1
Carub.0003s1296 Capsella rubella HOM05D001472 ORTHO05D007811 2.7e-52 208.8 166 66.3
CARHR088160 Cardamine hirsuta HOM05D001472 ORTHO05D007811 2.7e-52 208.8 166 66.9
Cpa.g.sc119.38 Carica papaya HOM05D001472 ORTHO05D007811 3.5e-52 208.4 166 66.9
Sp3g11700 Schrenkiella parvula HOM05D001472 ORTHO05D007811 4.6e-52 208.0 166 66.3
Thhalv10020319m.g Eutrema salsugineum HOM05D001472 ORTHO05D007811 7.8e-52 207.2 166 65.1
Potri.003G221600 Populus trichocarpa HOM05D001472 ORTHO05D007811 7.8e-52 207.2 166 65.1
FAN16G2109 Fragaria x ananassa HOM05D001472 ORTHO05D007811 1.0e-51 206.8 166 67.5
HanXRQChr13g0405211 Helianthus annuus HOM05D001472 ORTHO05D007811 1.0e-51 206.8 166 67.5
GSVIVG01025473001 Vitis vinifera HOM05D001472 ORTHO05D007811 1.0e-51 206.8 166 65.7
CAN.G1834.11 Capsicum annuum HOM05D001472 ORTHO05D007811 1.7e-51 206.1 166 65.7
FAN25G0602 Fragaria x ananassa HOM05D001472 ORTHO05D007811 1.7e-51 206.1 166 67.5
Sed0027407 Sechium edule HOM05D001472 ORTHO05D007811 1.7e-51 206.1 166 66.9
MD11G1003100 Malus domestica HOM05D001472 ORTHO05D007811 3.0e-51 205.3 166 66.9
SalBow3G3489 Salvia bowleyana HOM05D001472 ORTHO05D007811 3.0e-51 205.3 166 66.9
Manes.03G087300 Manihot esculenta HOM05D001472 ORTHO05D007811 3.9e-51 204.9 166 65.7
Nitab4.5_0006195g0050 Nicotiana tabacum HOM05D001472 ORTHO05D007811 3.9e-51 204.9 166 63.9
Peaxi162Scf00904g00214 Petunia axillaris HOM05D001472 ORTHO05D007811 3.9e-51 204.9 166 64.5
Actinidia16242 Actinidia chinensis HOM05D001472 ORTHO05D007811 5.1e-51 204.5 166 65.1
Peaxi162Scf00705g00617 Petunia axillaris HOM05D001472 ORTHO05D007811 5.1e-51 204.5 166 64.5
Solyc01g005540.4 Solanum lycopersicum HOM05D001472 ORTHO05D007811 5.1e-51 204.5 166 65.1
MD03G1003300 Malus domestica HOM05D001472 ORTHO05D007811 6.6e-51 204.1 166 66.3
Sed0020866 Sechium edule HOM05D001472 ORTHO05D007811 6.6e-51 204.1 166 66.3
Sopen01g001560 Solanum pennellii HOM05D001472 ORTHO05D007811 6.6e-51 204.1 166 65.1
PGSC0003DMG400032166 Solanum tuberosum HOM05D001472 ORTHO05D007811 6.6e-51 204.1 166 65.1
PGR119G2138 Punica granatum HOM05D001472 ORTHO05D007811 8.7e-51 203.8 166 65.7
BcaC05g29175 Brassica carinata HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 64.5
C05p54390 Brassica napus HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 64.5
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 64.5
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 64.5
Rhsim05G0069400 Rhododendron simsii HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 64.5
RcHm_v2.0_Chr5g0083841 Rosa chinensis HOM05D001472 ORTHO05D007811 1.1e-50 203.4 166 66.9
Cc01_g00140 Coffea canephora HOM05D001472 ORTHO05D007811 1.5e-50 203.0 166 63.9
AL3G25400 Arabidopsis lyrata HOM05D001472 ORTHO05D007811 1.9e-50 202.6 166 65.1
AT3G13490 Arabidopsis thaliana HOM05D001472 ORTHO05D007811 1.9e-50 202.6 166 65.1
A05p36040 Brassica napus HOM05D001472 ORTHO05D007811 1.9e-50 202.6 166 64.5
Eucgr.J01764 Eucalyptus grandis HOM05D001472 ORTHO05D007811 1.9e-50 202.6 166 64.5
FAN21G3965 Fragaria x ananassa HOM05D001472 ORTHO05D007811 1.9e-50 202.6 176 64.2
CsaV3_4G017540 Cucumis sativus L. HOM05D001472 ORTHO05D007811 2.5e-50 202.2 166 63.9
Migut.N00550 Erythranthe guttata HOM05D001472 ORTHO05D007811 3.3e-50 201.8 166 64.5
Rhsim13G0233000 Rhododendron simsii HOM05D001472 ORTHO05D007811 5.6e-50 201.1 166 64.5
Aa31LG8G690 Aethionema arabicum HOM05D001472 ORTHO05D007811 7.3e-50 200.7 166 64.5
MELO3C014727.2 Cucumis melo HOM05D001472 ORTHO05D007811 7.3e-50 200.7 166 63.9
Gohir.A08G014800 Gossypium hirsutum HOM05D001472 ORTHO05D007811 9.6e-50 200.3 166 63.3
vmacro04243 Vaccinium macrocarpon HOM05D001472 ORTHO05D007811 9.6e-50 200.3 166 63.9
vmacro23198 Vaccinium macrocarpon HOM05D001472 ORTHO05D007811 9.6e-50 200.3 166 63.9
Prupe.6G002900 Prunus persica HOM05D001472 ORTHO05D007811 1.3e-49 199.9 166 65.1
CSS0028494 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D007811 1.6e-49 199.5 166 64.5
Gohir.D08G025400 Gossypium hirsutum HOM05D001472 ORTHO05D007811 1.6e-49 199.5 166 63.3
Gorai.004G020700 Gossypium raimondii HOM05D001472 ORTHO05D007811 1.6e-49 199.5 166 63.3
Lj2C498G7 Lonicera japonica HOM05D001472 ORTHO05D007811 2.1e-49 199.1 166 64.5
CANSAT11G2257 Cannabis sativa HOM05D001472 ORTHO05D007811 3.6e-49 198.4 166 63.3
Oeu059655.1 Olea europaea HOM05D001472 ORTHO05D007811 3.6e-49 198.4 175 62.3
THA.LOC104810321 Tarenaya hassleriana HOM05D001472 ORTHO05D007811 3.6e-49 198.4 166 62.7
DCAR_032192 Daucus carota HOM05D001472 ORTHO05D007811 6.2e-49 197.6 166 65.1
TAR633G1259 Trochodendron aralioides HOM05D001472 ORTHO05D007811 6.2e-49 197.6 166 63.3
BcaB04g18767 Brassica carinata HOM05D001472 ORTHO05D007811 1.8e-48 196.1 166 63.9
Nn2g15862 Nelumbo nucifera HOM05D001472 ORTHO05D007811 2.4e-48 195.7 166 63.3
Duzib168G2316 Durio zibethinus HOM05D001472 ORTHO05D007811 4.0e-48 194.9 166 62.0
PSO541G5145 Papaver somniferum HOM05D001472 ORTHO05D007811 6.9e-48 194.1 166 62.0
PSO675G5228 Papaver somniferum HOM05D001472 ORTHO05D007811 6.9e-48 194.1 166 62.0
Hund16176 Selenicereus undatus HOM05D001472 ORTHO05D007811 6.9e-48 194.1 166 61.4
Thecc.04G056800 Theobroma cacao HOM05D001472 ORTHO05D007811 3.4e-47 191.8 166 61.4
Phvul.011G015700 Phaseolus vulgaris HOM05D001472 ORTHO05D007811 5.8e-47 191.0 166 61.4
Sc09g0000050 Simmondsia chinensis HOM05D001472 ORTHO05D007811 3.8e-46 188.3 166 59.0
Lj6C105T18 Lonicera japonica HOM05D001472 ORTHO05D007811 1.4e-45 186.4 111 81.1
Actinidia00904 Actinidia chinensis HOM05D001472 ORTHO05D007811 1.9e-45 186.0 111 81.1
ATR1145G100 Amborella trichopoda HOM05D001472 ORTHO05D007811 2.4e-45 185.7 166 59.6
SGA_v2.0_scaffold6G03312 Striga asiatica HOM05D001472 ORTHO05D007811 2.7e-44 182.2 220 50.5
EL10Ac4g10388 Beta vulgaris HOM05D001472 ORTHO05D007811 1.6e-41 172.9 161 59.0
Aqoxy5G00018 Aquilegia oxysepala HOM05D001472 ORTHO05D007811 2.1e-41 172.6 166 57.8
Mapoly0003s0001 Marchantia polymorpha HOM05D001472 ORTHO05D007811 2.0e-39 166.0 166 53.0
HPP92_024267 Vanilla planifolia HOM05D001472 ORTHO05D007811 2.0e-39 166.0 166 56.0
Pp3c19_5720 Physcomitrium patens HOM05D001472 ORTHO05D007811 2.6e-39 165.6 166 51.8
Os02g0623500 Oryza sativa ssp. japonica HOM05D001472 ORTHO05D007811 4.5e-39 164.9 166 55.4
HPP92_024255 Vanilla planifolia HOM05D002427 ORTHO05D002818 7.6e-39 164.1 166 56.0
Zm00001eb063750 Zea mays HOM05D001472 ORTHO05D007811 7.6e-39 164.1 166 54.2
CBR_g46728 Chara braunii HOM05D001472 ORTHO05D007811 2.9e-38 162.2 171 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4006 Anthoceros agrestis HOM05D001472 ORTHO05D007811 8.4e-38 160.6 166 53.6
AUR62040899 Chenopodium quinoa HOM05D001472 ORTHO05D007811 1.2e-36 156.8 111 69.4
AUR62042626 Chenopodium quinoa HOM05D001472 ORTHO05D007811 2.7e-36 155.6 111 68.5
ClCG02G024400 Citrullus lanatus HOM05D001472 ORTHO05D007811 6.7e-35 151.0 111 70.3
SMO358G0196 Selaginella moellendorffii HOM05D001472 ORTHO05D007811 2.5e-34 149.1 163 50.9
Nitab4.5_0026343g0010 Nicotiana tabacum HOM05D001472 ORTHO05D003170 5.3e-32 141.4 108 64.8
CDE10G1063 Ceratophyllum demersum HOM05D001472 ORTHO05D007811 2.6e-31 139.0 143 54.5
MCO02G308 Micromonas commoda HOM05D001472 ORTHO05D007811 6.0e-28 127.9 168 43.5
MBI19_g40258_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 4.3e-26 121.7 78 74.4
Cre06.g296250 Chlamydomonas reinhardtii HOM05D001472 ORTHO05D007811 4.5e-23 111.7 169 40.2
PRCOL_00005729 Prasinoderma coloniale HOM05D001472 ORTHO05D007811 7.4e-18 94.4 176 32.4
MBI18_g19685_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 2.0e-15 86.3 66 63.6
BcaC02g12032 Brassica carinata HOM05D001472 ORTHO05D027619 1.0e-11 73.9 45 75.6
BcaB02g09944 Brassica carinata HOM05D001472 ORTHO05D003170 2.0e-10 69.7 55 74.5
AL5G43040 Arabidopsis lyrata HOM05D001472 ORTHO05D002655 2.0e-07 59.7 110 34.5
Thhalv10020276m.g Eutrema salsugineum HOM05D001472 ORTHO05D002655 2.0e-07 59.7 110 34.5
PRCOL_00000537 Prasinoderma coloniale HOM05D001472 ORTHO05D002655 1.3e-06 57.0 169 26.6
Psat1g146840 Pisum sativum HOM05D001472 ORTHO05D002655 3.8e-06 55.5 110 33.6
C09p70380 Brassica napus HOM05D001472 ORTHO05D002655 6.5e-06 54.7 114 30.7


User provided reference genes

Program Settings