Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3402 Acer truncatum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Actinidia07205 Actinidia chinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Actinidia24174 Actinidia chinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Aa31LG1G12920 Aethionema arabicum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Aa31LG4G14280 Aethionema arabicum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Ah.01g016700 Amaranthus hybridus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AL6G33770 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AL6G33800 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AL6G47720 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AT5G22770 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AT5G22780 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
arahy.Tifrunner.gnm1.ann1.F9AZ7P Arachis hypogaea HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
arahy.Tifrunner.gnm1.ann1.MS8XLG Arachis hypogaea HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
EL10Ac9g21056 Beta vulgaris HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
A10p18250 Brassica napus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
C09p53880 Brassica napus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
BolC9t58261H Brassica oleracea HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
BraA10t43900Z Brassica rapa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CSS0004620 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CSS0041991 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CANSAT64G1824 Cannabis sativa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Carub.0006s2048 Capsella rubella HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Carub.0006s2049 Capsella rubella HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CAN.G919.3 Capsicum annuum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CARHR151250 Cardamine hirsuta HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CARHR190820 Cardamine hirsuta HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Cfa010100 Carpinus fangiana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CiPaw.13G142000 Carya illinoinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CiPaw.14G104400 Carya illinoinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AUR62023959 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
AUR62031755 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Ca_01687_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
ClCG02G021820 Citrullus lanatus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Ciclev10027737m.g Citrus clementina HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Cc01_g09940 Coffea canephora HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Haze_23466 Corylus avellana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
MELO3C021463.2 Cucumis melo HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CsaV3_6G014610 Cucumis sativus L. HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
DCAR_018747 Daucus carota HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Dinv12535 Davidia involucrata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
ECA233G5521 Erigeron canadensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
ECA238G1224 Erigeron canadensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Migut.D02325 Erythranthe guttata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Migut.O00583 Erythranthe guttata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Eucgr.J00415 Eucalyptus grandis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Thhalv10012556m.g Eutrema salsugineum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
FvH4_3g30090 Fragaria vesca HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
FAN11G0593 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
FAN16G3173 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
FAN21G3154 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
FAN25G1715 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Glyma.12G180600 Glycine max HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Glyma.13G320200 Glycine max HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
HanXRQChr13g0396891 Helianthus annuus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
HanXRQChr14g0451931 Helianthus annuus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Hma1.2p1_0051F.1_g029810 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lsat_1_v5_gn_2_96621 Lactuca sativa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lj1A219G36 Lonicera japonica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lj2C996G14 Lonicera japonica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lj3g0021930 Lotus japonicus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lalb_Chr14g0374281 Lupinus albus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lalb_Chr22g0350571 Lupinus albus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Lalb_Chr24g0395091 Lupinus albus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
MD03G1132700 Malus domestica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
MD11G1155000 Malus domestica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Manes.11G155700 Manihot esculenta HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Medtr2g084610 Medicago truncatula HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Nitab4.5_0003470g0070 Nicotiana tabacum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Nitab4.5_0004926g0020 Nicotiana tabacum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Oeu008377.1 Olea europaea HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Oeu010644.1 Olea europaea HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Peaxi162Scf00157g00039 Petunia axillaris HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Peaxi162Scf00789g00218 Petunia axillaris HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Phvul.005G128200 Phaseolus vulgaris HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Psat5g254120 Pisum sativum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Potri.004G189700 Populus trichocarpa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Potri.009G150300 Populus trichocarpa HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Prupe.6G117500 Prunus persica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
PGR119G0792 Punica granatum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
QL01p014018 Quercus lobata HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Rhsim01G0209300 Rhododendron simsii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Rhsim13G0104500 Rhododendron simsii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
RcHm_v2.0_Chr5g0055751 Rosa chinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sabra04G0128300 Salix brachista HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sabra09G0119000 Salix brachista HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
SalBow6G6633 Salvia bowleyana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sp6g22650 Schrenkiella parvula HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sed0000238 Sechium edule HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sed0008575 Sechium edule HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Hund00800 Selenicereus undatus HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sc21g0004640 Simmondsia chinensis HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Solyc06g074650.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Solyc11g066770.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sopen06g031070 Solanum pennellii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
Sopen11g026490 Solanum pennellii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
SGA_v2.0_scaffold193G40716 Striga asiatica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
SGA_v2.0_scaffold27G11598 Striga asiatica HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
THA.LOC104799529 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
THA.LOC104814807 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
TPR.G32382 Trifolium pratense HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
TPR.G39942 Trifolium pratense HOM05D000929 ORTHO05D030605 2.0e-12 74.3 35 100.0
TWI31G0368 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
TWI79G0614 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
unitig_27.g25115 Utricularia gibba HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
vmacro03226 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
vmacro14382 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
vmacro23023 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
VMungo1080G1504 Vigna mungo HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
GSVIVG01031413001 Vitis vinifera HOM05D000929 ORTHO05D004137 2.0e-12 74.3 35 100.0
CAN.G644.41 Capsicum annuum HOM05D000929 ORTHO05D004137 2.7e-12 73.9 35 97.1
COL.COLO4_19274 Corchorus olitorius HOM05D000929 ORTHO05D004137 2.7e-12 73.9 35 97.1
Thecc.09G293300 Theobroma cacao HOM05D000929 ORTHO05D004137 2.7e-12 73.9 35 97.1
ATR0820G043 Amborella trichopoda HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
THA.LOC104810893 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
TAR633G0080 Trochodendron aralioides HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
TAR636G1238 Trochodendron aralioides HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
HPP92_027615 Vanilla planifolia HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
HPP92_028038 Vanilla planifolia HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
Zm00001eb000860 Zea mays HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
Zm00001eb404080 Zea mays HOM05D000929 ORTHO05D004137 4.5e-12 73.2 35 97.1
Aqoxy2G01493 Aquilegia oxysepala HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
DCAR_015485 Daucus carota HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 97.1
Duzib150G0964 Durio zibethinus HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
Gohir.A09G092000 Gossypium hirsutum HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
Gohir.D09G091900 Gossypium hirsutum HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
Gorai.006G108500 Gossypium raimondii HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
PSO339G3653 Papaver somniferum HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
PSO384G2211 Papaver somniferum HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
Psat4g195400 Pisum sativum HOM05D000929 ORTHO05D002623 5.9e-12 72.8 35 97.1
Sp5g15820 Schrenkiella parvula HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 97.1
SEGI_28883 Sequoiadendron giganteum HOM05D000929 ORTHO05D030605 5.9e-12 72.8 35 94.3
SEGI_29219 Sequoiadendron giganteum HOM05D000929 ORTHO05D004137 5.9e-12 72.8 35 94.3
A01p26810 Brassica napus HOM05D000929 ORTHO05D004137 7.8e-12 72.4 35 97.1
C01p34170 Brassica napus HOM05D000929 ORTHO05D004137 7.8e-12 72.4 35 97.1
BolC1t03387H Brassica oleracea HOM05D000929 ORTHO05D004137 7.8e-12 72.4 35 97.1
BraA01t02610Z Brassica rapa HOM05D000929 ORTHO05D004137 7.8e-12 72.4 35 97.1
Manes.04G010400 Manihot esculenta HOM05D000929 ORTHO05D004137 7.8e-12 72.4 35 94.3
Actinidia03683 Actinidia chinensis HOM05D000929 ORTHO05D004137 1.0e-11 72.0 35 97.1
CDE02G4539 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 1.0e-11 72.0 35 94.3
CDE04G0670 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 1.0e-11 72.0 35 94.3
Nn2g13966 Nelumbo nucifera HOM05D000929 ORTHO05D004137 1.0e-11 72.0 35 94.3
AagrBONN_evm.TU.Sc2ySwM_344.3846 Anthoceros agrestis HOM05D000929 ORTHO05D004137 1.3e-11 71.6 35 94.3
Mapoly0072s0011 Marchantia polymorpha HOM05D000929 ORTHO05D004137 1.3e-11 71.6 35 94.3
arahy.Tifrunner.gnm1.ann1.JFAW9R Arachis hypogaea HOM05D000929 ORTHO05D004137 1.7e-11 71.2 35 91.4
arahy.Tifrunner.gnm1.ann1.SC897I Arachis hypogaea HOM05D000929 ORTHO05D004137 1.7e-11 71.2 35 91.4
Gohir.A08G003300 Gossypium hirsutum HOM05D000929 ORTHO05D004137 1.7e-11 71.2 35 91.4
Gorai.004G008000 Gossypium raimondii HOM05D000929 ORTHO05D004137 1.7e-11 71.2 35 91.4
SEGI_18046 Sequoiadendron giganteum HOM05D000929 ORTHO05D030605 1.7e-11 71.2 35 91.4
Cpa.g.sc47.59 Carica papaya HOM05D000929 ORTHO05D004137 2.3e-11 70.9 35 94.3
CBR_g29503 Chara braunii HOM05D000929 ORTHO05D004137 2.9e-11 70.5 35 91.4
Duzib168G0512 Durio zibethinus HOM05D000929 ORTHO05D004137 2.9e-11 70.5 35 88.6
Duzib170G1132 Durio zibethinus HOM05D000929 ORTHO05D004137 2.9e-11 70.5 35 91.4
Pp3c17_6470 Physcomitrium patens HOM05D000929 ORTHO05D004137 2.9e-11 70.5 35 91.4
SMO353G0315 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 2.9e-11 70.5 35 91.4
Gohir.D08G013700 Gossypium hirsutum HOM05D000929 ORTHO05D004137 6.6e-11 69.3 35 88.6
Psat2g086680 Pisum sativum HOM05D000929 ORTHO05D004137 1.5e-10 68.2 35 91.4
SEGI_38591 Sequoiadendron giganteum HOM05D000929 ORTHO05D030605 1.9e-10 67.8 35 88.6
Pp3c17_2250 Physcomitrium patens HOM05D000929 ORTHO05D004137 3.3e-10 67.0 35 88.6
vmacro02549 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 5.6e-10 66.2 35 88.6
Pp3c1_29560 Physcomitrium patens HOM05D000929 ORTHO05D004137 7.3e-10 65.9 35 82.9
Lsat_1_v5_gn_6_42741 Lactuca sativa HOM05D000929 ORTHO05D004137 8.0e-09 62.4 33 87.9
SHI06141 Sapria himalayana HOM05D000929 ORTHO05D004137 2.3e-08 60.8 31 87.1
PRCOL_00005986 Prasinoderma coloniale HOM05D000929 ORTHO05D004137 5.2e-08 59.7 35 68.6
Cre12.g488850 Chlamydomonas reinhardtii HOM05D000929 ORTHO05D004137 1.7e-06 54.7 35 62.9
COL.COLO4_18716 Corchorus olitorius HOM05D000929 ORTHO05D004137 2.2e-06 54.3 26 92.3


User provided reference genes

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