Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39910 Trifolium pratense HOM05D004093 ORTHO05D004981 5.4e-22 106.7 51 100.0
Ca_17297_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 8.9e-17 89.4 44 93.2
Ca_17304_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 8.9e-17 89.4 44 93.2
Medtr1g113700 Medicago truncatula HOM05D004093 ORTHO05D004981 8.9e-17 89.4 44 93.2
Medtr4g120810 Medicago truncatula HOM05D004093 ORTHO05D004981 8.9e-17 89.4 44 93.2
Medtr8g104740 Medicago truncatula HOM05D004093 ORTHO05D004981 8.9e-17 89.4 44 93.2
HanXRQChr03g0069101 Helianthus annuus HOM05D004093 ORTHO05D004981 2.0e-16 88.2 44 90.9
HanXRQChr16g0510261 Helianthus annuus HOM05D004093 ORTHO05D004981 2.0e-16 88.2 44 90.9
MSTRG.27768 Avicennia marina HOM05D004093 ORTHO05D004981 3.4e-16 87.4 44 90.9
Migut.N01121 Erythranthe guttata HOM05D004093 ORTHO05D004981 3.4e-16 87.4 44 90.9
Medtr4g052070 Medicago truncatula HOM05D004093 ORTHO05D004981 3.4e-16 87.4 44 90.9
SGA_v2.0_scaffold219G42544 Striga asiatica HOM05D004093 ORTHO05D004981 3.4e-16 87.4 44 90.9
Phvul.011G054700 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 5.8e-16 86.7 49 83.7
arahy.Tifrunner.gnm1.ann1.14EEYB Arachis hypogaea HOM05D004093 ORTHO05D004981 7.6e-16 86.3 44 88.6
arahy.Tifrunner.gnm1.ann1.K8EMZF Arachis hypogaea HOM05D004093 ORTHO05D004981 7.6e-16 86.3 44 88.6
ECA233G6085 Erigeron canadensis HOM05D004093 ORTHO05D004981 7.6e-16 86.3 44 88.6
Glyma.08G043900 Glycine max HOM05D004093 ORTHO05D004981 7.6e-16 86.3 44 88.6
Dinv16064 Davidia involucrata HOM05D004093 ORTHO05D004981 9.9e-16 85.9 44 88.6
ECA240G1647 Erigeron canadensis HOM05D004093 ORTHO05D004981 9.9e-16 85.9 42 90.5
Glyma.05G236700 Glycine max HOM05D004093 ORTHO05D004981 9.9e-16 85.9 51 80.4
Phvul.002G318600 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 9.9e-16 85.9 44 88.6
VMungo0251G2341 Vigna mungo HOM05D004093 ORTHO05D004981 9.9e-16 85.9 44 88.6
Lj5C222T15 Lonicera japonica HOM05D004093 ORTHO05D004981 1.3e-15 85.5 44 88.6
ECA233G4634 Erigeron canadensis HOM05D004093 ORTHO05D004981 1.7e-15 85.1 44 86.4
Hma1.2p1_1758F.1_g301170 Hydrangea macrophylla HOM05D004093 ORTHO05D004981 1.7e-15 85.1 44 86.4
Lj4g0018571 Lotus japonicus HOM05D004093 ORTHO05D004981 1.7e-15 85.1 42 90.5
Lalb_Chr16g0387791 Lupinus albus HOM05D004093 ORTHO05D004981 1.7e-15 85.1 44 88.6
Potri.001G289001 Populus trichocarpa HOM05D004093 ORTHO05D004981 2.9e-15 84.3 44 86.4
FAN15G0664 Fragaria x ananassa HOM05D004093 ORTHO05D004981 3.8e-15 84.0 44 86.4
CiPaw.06G163100 Carya illinoinensis HOM05D004093 ORTHO05D004981 4.9e-15 83.6 44 84.1
Dinv09528 Davidia involucrata HOM05D004093 ORTHO05D004981 4.9e-15 83.6 44 86.4
Manes.07G052300 Manihot esculenta HOM05D004093 ORTHO05D004981 4.9e-15 83.6 44 84.1
CANSAT25G3849 Cannabis sativa HOM05D004093 ORTHO05D004981 6.4e-15 83.2 44 86.4
DCAR_021934 Daucus carota HOM05D004093 ORTHO05D004981 6.4e-15 83.2 44 86.4
Lsat_1_v5_gn_9_113901 Lactuca sativa HOM05D004093 ORTHO05D004981 6.4e-15 83.2 44 86.4
Prupe.8G151800 Prunus persica HOM05D004093 ORTHO05D004981 6.4e-15 83.2 44 86.4
RcHm_v2.0_Chr6g0247831 Rosa chinensis HOM05D004093 ORTHO05D004981 6.4e-15 83.2 44 86.4
CSS0001341 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 81.8
CSS0016143 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 81.8
Cfa004713 Carpinus fangiana HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 84.1
Haze_10324 Corylus avellana HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 84.1
QL11p028820 Quercus lobata HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 84.1
Hund17142 Selenicereus undatus HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 86.4
vmacro01935 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 8.4e-15 82.8 44 84.1
A01p04580 Brassica napus HOM05D004093 ORTHO05D004981 1.1e-14 82.4 44 81.8
FvH4_2g03040 Fragaria vesca HOM05D004093 ORTHO05D004981 1.1e-14 82.4 44 84.1
FAN24G1787 Fragaria x ananassa HOM05D004093 ORTHO05D004981 1.1e-14 82.4 44 84.1
Rhsim11G0149600 Rhododendron simsii HOM05D004093 ORTHO05D004981 1.1e-14 82.4 44 81.8
GSVIVG01037036001 Vitis vinifera HOM05D004093 ORTHO05D004981 1.1e-14 82.4 44 81.8
Duzib052G0943 Durio zibethinus HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 81.8
FAN27G3135 Fragaria x ananassa HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 84.1
Gohir.A01G180900 Gossypium hirsutum HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 84.1
Gohir.D01G172000 Gossypium hirsutum HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 84.1
Gorai.002G213600 Gossypium raimondii HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 84.1
Sed0024148 Sechium edule HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 81.8
Thecc.02G031600 Theobroma cacao HOM05D004093 ORTHO05D004981 1.4e-14 82.0 44 84.1
CiPaw.05G021800 Carya illinoinensis HOM05D004093 ORTHO05D004981 1.9e-14 81.6 44 84.1
MD10G1112200 Malus domestica HOM05D004093 ORTHO05D004981 1.9e-14 81.6 44 84.1
THA.LOC104807205 Tarenaya hassleriana HOM05D004093 ORTHO05D004981 1.9e-14 81.6 44 81.8
A08p17410 Brassica napus HOM05D004093 ORTHO05D004981 3.2e-14 80.9 44 79.5
A08p17440 Brassica napus HOM05D004093 ORTHO05D004981 3.2e-14 80.9 44 79.5
COL.COLO4_17799 Corchorus olitorius HOM05D004093 ORTHO05D004981 3.2e-14 80.9 44 79.5
Sabra09G0065000 Salix brachista HOM05D004093 ORTHO05D004981 3.2e-14 80.9 41 87.8
TWI59G0012 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 3.2e-14 80.9 44 79.5
AT4G33760 Arabidopsis thaliana HOM05D004093 ORTHO05D004981 4.2e-14 80.5 44 79.5
Carub.0007s0667 Capsella rubella HOM05D004093 ORTHO05D004981 4.2e-14 80.5 44 79.5
MELO3C018029.2 Cucumis melo HOM05D004093 ORTHO05D004981 4.2e-14 80.5 44 79.5
CsaV3_4G000020 Cucumis sativus L. HOM05D004093 ORTHO05D004981 4.2e-14 80.5 44 79.5
Actinidia04397 Actinidia chinensis HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 79.5
Cc02_g20210 Coffea canephora HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 81.8
Nitab4.5_0010657g0010 Nicotiana tabacum HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 79.5
PGR119G0904 Punica granatum HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 79.5
Solyc01g106740.4 Solanum lycopersicum HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 79.5
Sopen01g049060 Solanum pennellii HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 79.5
TAR159G0001 Trochodendron aralioides HOM05D004093 ORTHO05D004981 5.4e-14 80.1 44 81.8
Atru.chr5.2252 Acer truncatum HOM05D004093 ORTHO05D004981 7.1e-14 79.7 44 81.8
Peaxi162Scf00016g03248 Petunia axillaris HOM05D004093 ORTHO05D004981 7.1e-14 79.7 44 77.3
TPR.G32673 Trifolium pratense HOM05D004093 ORTHO05D004981 7.1e-14 79.7 47 80.9
BcaNung04674 Brassica carinata HOM05D004093 ORTHO05D004981 9.2e-14 79.3 44 77.3
C01p04970 Brassica napus HOM05D004093 ORTHO05D004981 9.2e-14 79.3 44 77.3
BraA01t00441Z Brassica rapa HOM05D004093 ORTHO05D004981 9.2e-14 79.3 44 77.3
Potri.009G084300 Populus trichocarpa HOM05D004093 ORTHO05D004981 9.2e-14 79.3 44 79.5
BcaC01g00967 Brassica carinata HOM05D004093 ORTHO05D004981 1.2e-13 79.0 44 77.3
C03p86430 Brassica napus HOM05D004093 ORTHO05D004981 1.2e-13 79.0 44 77.3
BolC3t20936H Brassica oleracea HOM05D004093 ORTHO05D004981 1.2e-13 79.0 44 77.3
Thhalv10024609m.g Eutrema salsugineum HOM05D004093 ORTHO05D004981 1.2e-13 79.0 44 77.3
Aqoxy2G01432 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 1.6e-13 78.6 41 85.4
Eucgr.I02505 Eucalyptus grandis HOM05D004093 ORTHO05D004981 1.6e-13 78.6 44 77.3
Sc20g0001830 Simmondsia chinensis HOM05D004093 ORTHO05D004981 1.6e-13 78.6 44 81.8
TWI14G0771 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 1.6e-13 78.6 44 79.5
unitig_62.g23638 Utricularia gibba HOM05D004093 ORTHO05D004981 1.6e-13 78.6 44 81.8
vmacro20830 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 1.6e-13 78.6 41 85.4
CAN.G606.83 Capsicum annuum HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 77.3
Cpa.g.sc1108.1 Carica papaya HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 79.5
Oeu018200.1 Olea europaea HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 79.5
PSO210G2081 Papaver somniferum HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 77.3
PSO447G0184 Papaver somniferum HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 77.3
PGSC0003DMG402005133 Solanum tuberosum HOM05D004093 ORTHO05D004981 2.1e-13 78.2 44 77.3
BcaB03g11876 Brassica carinata HOM05D004093 ORTHO05D004981 2.7e-13 77.8 44 77.3
AUR62023346 Chenopodium quinoa HOM05D004093 ORTHO05D004981 2.7e-13 77.8 44 77.3
Ciclev10028050m.g Citrus clementina HOM05D004093 ORTHO05D004981 2.7e-13 77.8 44 77.3
Oeu037299.1 Olea europaea HOM05D004093 ORTHO05D004981 2.7e-13 77.8 44 77.3
Aa31sc178G40 Aethionema arabicum HOM05D004093 ORTHO05D004981 3.5e-13 77.4 44 77.3
AL7G17710 Arabidopsis lyrata HOM05D004093 ORTHO05D004981 3.5e-13 77.4 44 77.3
EL10Ac1g00697 Beta vulgaris HOM05D004093 ORTHO05D004981 3.5e-13 77.4 44 77.3
BcaC09g52186 Brassica carinata HOM05D004093 ORTHO05D004981 3.5e-13 77.4 44 75.0
BolC1t00478H Brassica oleracea HOM05D004093 ORTHO05D004981 3.5e-13 77.4 44 75.0
Nitab4.5_0000772g0040 Nicotiana tabacum HOM05D004093 ORTHO05D004981 4.6e-13 77.0 38 86.8
CARHR241850 Cardamine hirsuta HOM05D004093 ORTHO05D004981 7.8e-13 76.3 44 77.3
Ah.05g177500 Amaranthus hybridus HOM05D004093 ORTHO05D004981 1.0e-12 75.9 44 75.0
MBI16_g34665_MAGBIO Magnolia biondii HOM05D004093 ORTHO05D004981 1.7e-12 75.1 44 72.7
AUR62013810 Chenopodium quinoa HOM05D004093 ORTHO05D004981 2.3e-12 74.7 44 75.0
Sp7g31500 Schrenkiella parvula HOM05D004093 ORTHO05D004981 2.3e-12 74.7 44 75.0
Nn6g32059 Nelumbo nucifera HOM05D004093 ORTHO05D004981 8.7e-12 72.8 44 72.7
SMO364G0944 Selaginella moellendorffii HOM05D004093 ORTHO05D004981 1.9e-11 71.6 39 79.5
CDE04G3016 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 4.3e-11 70.5 44 68.2
Os01g0153400 Oryza sativa ssp. japonica HOM05D004093 ORTHO05D004981 7.3e-11 69.7 41 70.7
CBR_g7978 Chara braunii HOM05D004093 ORTHO05D004981 1.3e-10 68.9 41 75.6
Zm00001eb124020 Zea mays HOM05D004093 ORTHO05D004981 1.6e-10 68.6 41 73.2
CDE07G1203 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 2.1e-10 68.2 44 63.6
ATR0767G039 Amborella trichopoda HOM05D004093 ORTHO05D004981 2.8e-10 67.8 44 63.6
Mapoly0029s0082 Marchantia polymorpha HOM05D004093 ORTHO05D004981 1.1e-09 65.9 41 65.9
HPP92_001209 Vanilla planifolia HOM05D004093 ORTHO05D004981 1.8e-09 65.1 44 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2705 Anthoceros agrestis HOM05D004093 ORTHO05D004981 4.0e-09 63.9 39 69.2
AagrBONN_evm.TU.Sc2ySwM_117.2710 Anthoceros agrestis HOM05D004093 ORTHO05D004981 4.0e-09 63.9 39 69.2
Pp3c20_5000 Physcomitrium patens HOM05D004093 ORTHO05D004981 6.9e-09 63.2 39 71.8
SEGI_31310 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 3.4e-08 60.8 42 64.3
PRCOL_00006371 Prasinoderma coloniale HOM05D004093 ORTHO05D004981 7.6e-08 59.7 41 61.0
Cre09.g390986 Chlamydomonas reinhardtii HOM05D004093 ORTHO05D004981 2.9e-07 57.8 44 61.4
MCO14G538 Micromonas commoda HOM05D004093 ORTHO05D004981 3.2e-06 54.3 40 57.5


User provided reference genes

Program Settings