Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 3.4e-108 396.0 394 100.0
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 8.6e-67 258.5 334 88.0
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 5.6e-66 255.8 378 78.0
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 3.7e-62 243.0 330 87.6
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 5.6e-58 229.2 337 84.3
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 5.6e-58 229.2 337 84.3
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 2.5e-50 203.8 328 80.8
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.7e-46 191.0 331 66.8
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.1e-44 184.1 329 76.9
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 3.0e-43 180.3 329 75.7
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.5e-42 177.2 337 76.6
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 6.2e-41 172.6 333 71.8
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.4e-40 171.4 337 74.2
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 3.1e-40 170.2 330 66.1
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 5.3e-40 169.5 326 71.8
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 6.9e-40 169.1 326 71.8
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 1.5e-39 167.9 346 73.1
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 2.6e-39 167.2 334 74.6
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.3e-38 164.9 333 73.9
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.2e-38 164.1 333 71.2
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 4.9e-38 162.9 333 72.7
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 6.4e-38 162.5 343 68.8
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.4e-37 161.4 340 74.4
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 1.4e-37 161.4 340 74.4
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 3.2e-37 160.2 333 71.5
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 1.6e-36 157.9 333 73.0
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 6.0e-36 156.0 328 74.1
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 6.0e-36 156.0 333 72.7
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.3e-35 154.1 323 73.7
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 3.0e-35 153.7 331 71.0
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 1.9e-34 151.0 333 72.7
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 4.3e-34 149.8 333 72.4
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 5.6e-34 149.4 329 71.1
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 5.6e-34 149.4 330 71.5
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.3e-33 148.3 329 66.9
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.3e-33 148.3 329 69.3
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 1.3e-33 148.3 329 45.9
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 2.1e-33 147.5 330 72.7
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 2.1e-33 147.5 328 71.3
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.8e-33 147.1 332 71.4
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.6e-33 146.7 329 69.3
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 3.6e-33 146.7 326 72.4
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 6.2e-33 146.0 330 70.3
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 6.2e-33 146.0 335 72.2
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 8.1e-33 145.6 329 72.0
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 3.1e-32 143.7 332 66.9
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 3.1e-32 143.7 327 72.8
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 5.3e-32 142.9 323 67.5
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 5.3e-32 142.9 330 71.2
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 1.2e-31 141.7 322 70.2
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 1.2e-31 141.7 334 70.7
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 1.5e-31 141.4 328 72.9
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 2.0e-31 141.0 322 71.4
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 2.6e-31 140.6 322 69.9
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 2.6e-31 140.6 327 70.6
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 9.9e-31 138.7 327 70.3
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.7e-30 137.9 316 73.1
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 3.8e-30 136.7 329 70.5
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 8.4e-30 135.6 328 69.2
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 1.1e-29 135.2 328 68.6
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 1.1e-29 135.2 320 71.9
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.4e-29 134.8 322 70.2
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 1.4e-29 134.8 328 68.9
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 2.4e-29 134.0 328 68.6
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 7.1e-29 132.5 327 70.6
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 9.3e-29 132.1 328 70.4
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 1.6e-28 131.3 316 71.5
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 2.1e-28 131.0 324 64.2
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 3.5e-28 130.2 328 68.3
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 6.0e-28 129.4 317 70.3
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 1.0e-27 128.6 336 63.1
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 1.3e-27 128.3 279 78.1
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 1.3e-27 128.3 327 62.7
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.3e-27 128.3 331 70.4
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 5.1e-27 126.3 321 64.2
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 5.1e-27 126.3 327 70.3
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 8.7e-27 125.6 323 63.2
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 1.1e-26 125.2 312 73.4
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.1e-26 125.2 321 63.2
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 7.4e-26 122.5 320 69.4
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.6e-25 121.3 327 69.1
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 8.1e-25 119.0 330 69.7
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 1.4e-24 118.2 325 70.2
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 2.4e-24 117.5 328 68.0
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 4.0e-24 116.7 303 75.2
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 4.5e-23 113.2 325 64.3
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 9.9e-23 112.1 324 65.4
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 2.2e-22 110.9 328 57.0
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.2e-22 110.9 318 67.6
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 6.4e-22 109.4 278 76.6
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 1.1e-21 108.6 278 75.5
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.2e-20 105.1 328 67.7
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 2.1e-20 104.4 330 67.3
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 3.5e-20 103.6 330 67.3
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 7.9e-20 102.4 315 67.0
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 1.8e-19 101.3 283 75.6
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.3e-19 100.9 65 69.2
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 2.8e-17 94.0 330 61.5
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 3.7e-17 93.6 330 61.2
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 3.7e-17 93.6 324 47.2
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 6.2e-17 92.8 330 61.2
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 6.2e-17 92.8 330 61.2
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 1.4e-16 91.7 97 54.6
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 1.2e-15 88.6 59 64.4
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.5e-15 88.2 318 41.8
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 2.2e-14 84.3 293 35.2
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.9e-13 81.3 62 54.8
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 4.2e-13 80.1 59 61.0
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 5.5e-13 79.7 293 48.1
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.2e-12 78.6 80 53.8
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 2.8e-09 67.4 70 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 4.8e-09 66.6 65 46.2
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 1.1e-08 65.5 69 37.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.4e-08 65.1 46 63.0
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.4e-08 65.1 53 56.6
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 2.4e-08 64.3 70 42.9
HanXRQChr15g0466591 Helianthus annuus HOM05D002901 ORTHO05D003183 3.1e-08 63.9 65 40.0
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 3.1e-08 63.9 68 41.2
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 5.3e-08 63.2 70 41.4
SMO353G0202 Selaginella moellendorffii HOM05D006835 ORTHO05D001299 5.3e-08 63.2 70 40.0
EL10Ac9g21731 Beta vulgaris HOM05D001557 ORTHO05D001299 6.9e-08 62.8 70 38.6
Mapoly0002s0171 Marchantia polymorpha HOM05D005605 ORTHO05D001299 6.9e-08 62.8 70 38.6
AUR62011331 Chenopodium quinoa HOM05D001557 ORTHO05D001299 9.0e-08 62.4 70 38.6
SEGI_01405 Sequoiadendron giganteum HOM05D001557 ORTHO05D001299 1.2e-07 62.0 66 42.4
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.0e-07 61.2 63 44.4
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 2.0e-07 61.2 65 40.0
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 2.6e-07 60.8 65 41.5
Nitab4.5_0005679g0020 Nicotiana tabacum HOM05D005956 ORTHO05D007197 2.6e-07 60.8 71 36.6
Lsat_1_v5_gn_9_1861 Lactuca sativa HOM05D002901 ORTHO05D003183 4.5e-07 60.1 50 46.0
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 5.9e-07 59.7 43 58.1
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 5.9e-07 59.7 60 43.3
ECA247G3292 Erigeron canadensis HOM05D002901 ORTHO05D003183 7.7e-07 59.3 50 44.0
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 7.7e-07 59.3 50 46.0
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 7.7e-07 59.3 65 40.0
Pp3c1_25410 Physcomitrium patens HOM05D002901 ORTHO05D003183 7.7e-07 59.3 72 34.7
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 7.7e-07 59.3 50 44.0
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 7.7e-07 59.3 64 39.1
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 1.0e-06 58.9 50 46.0
Manes.15G148100 Manihot esculenta HOM05D001557 ORTHO05D001299 1.0e-06 58.9 70 37.1
Sabra04G0100100 Salix brachista HOM05D001557 ORTHO05D001299 1.0e-06 58.9 70 38.6
Aqoxy6G01086 Aquilegia oxysepala HOM05D001557 ORTHO05D001299 1.3e-06 58.5 70 35.7
CBR_g26328 Chara braunii HOM05D002901 ORTHO05D003183 1.3e-06 58.5 73 34.2
AUR62016730 Chenopodium quinoa HOM05D001557 ORTHO05D001299 1.3e-06 58.5 70 37.1
Potri.004G150600 Populus trichocarpa HOM05D001557 ORTHO05D001299 1.3e-06 58.5 66 39.4
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.3e-06 58.5 61 39.3
CANSAT25G2219 Cannabis sativa HOM05D002901 ORTHO05D003183 2.2e-06 57.8 56 37.5
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 2.2e-06 57.8 61 37.7
Pp3c14_12200 Physcomitrium patens HOM05D002901 ORTHO05D003183 2.2e-06 57.8 72 36.1
Pp3c5_9520 Physcomitrium patens HOM05D005605 ORTHO05D001299 2.2e-06 57.8 70 32.9
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 2.9e-06 57.4 58 41.4
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 2.9e-06 57.4 94 41.5
Lsat_1_v5_gn_2_2920 Lactuca sativa HOM05D002901 ORTHO05D003183 3.8e-06 57.0 50 46.0
RcHm_v2.0_Chr6g0291971 Rosa chinensis HOM05D002901 ORTHO05D003183 3.8e-06 57.0 65 38.5
DCAR_018383 Daucus carota HOM05D002901 ORTHO05D003183 5.0e-06 56.6 50 44.0
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 5.0e-06 56.6 59 40.7
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 6.5e-06 56.2 62 41.9
LjContig00155g0015255 Lotus japonicus HOM05D002901 ORTHO05D003183 6.5e-06 56.2 50 44.0
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 6.5e-06 56.2 68 39.7
Prupe.8G247800 Prunus persica HOM05D002901 ORTHO05D003183 6.5e-06 56.2 65 36.9
Ah.01g006230 Amaranthus hybridus HOM05D003825 ORTHO05D004491 8.5e-06 55.8 70 34.3
Dinv41812 Davidia involucrata HOM05D002901 ORTHO05D003183 8.5e-06 55.8 50 42.0
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 8.5e-06 55.8 58 39.7
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 8.5e-06 55.8 58 39.7
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 8.5e-06 55.8 58 39.7


User provided reference genes

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