Gene: AT4G38160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G38160
  • Transcript Identifier AT4G38160.4
  • Gene Type Coding gene
  • Location Chr4 : 17902412-17903413 : positive

Gene Family Information

  • ID HOM05D006835
  • #Genes/#Species 118/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G38160.4
  • symbol pde191
  • full_name pigment defective 191
  • uniprot Q9SZL6

Descriptions

  • Description Mitochondrial transcription termination factor family protein
  • Computational description pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009658
IBA
GOA Databasechloroplast organization
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0032502
IBA
GOA Databasedevelopmental process
GO:0006353
IEA
GOA DatabaseDNA-templated transcription, termination
GO:0008033
IMP
Gene OntologytRNA processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003690
IDA
IEA
Gene Ontologydouble-stranded DNA binding1
GO:0003690
IEA
InterProdouble-stranded DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
Gene OntologyDNA binding1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0003727
IDA
Gene Ontologysingle-stranded RNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042651
IDA
Gene Ontologythylakoid membrane1
GO:0009507
IBA
IEA
GOA Databasechloroplast
GO:0009507
IDA
ISM
Gene Ontologychloroplast1
GO:0009536
IEA
GOA Databaseplastid
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
ISM
Gene Ontologymitochondrion1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038538 MTERF superfamily, mitochondrial/chloroplastic
IPR003690 Transcription termination factor, mitochondrial/chloroplastic
Mapman id Description
15.6.2.2 RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF)