Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 4.3e-234 814.3 414 100.0
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.8e-225 785.0 414 95.7
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.5e-215 752.7 415 92.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.4e-207 724.9 414 87.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 4.9e-206 721.1 414 87.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 8.4e-206 720.3 406 90.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.4e-205 718.8 414 88.2
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.2e-205 718.0 411 87.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.9e-204 713.8 414 87.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 6.6e-203 710.7 416 86.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-199 699.9 414 84.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.9e-199 696.8 414 84.1
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 83.3
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 6.7e-195 684.1 414 83.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.5e-194 682.9 414 82.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 3.3e-194 681.8 414 82.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 82.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 82.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 9.6e-194 680.2 414 82.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 82.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 81.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 81.6
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.3e-192 674.5 409 82.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-191 672.9 414 81.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.6e-191 672.2 414 80.4
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 80.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 81.4
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 80.0
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 80.0
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 8.4e-190 667.2 414 80.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.1e-189 666.8 410 81.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.4e-189 666.4 414 80.4
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.5e-189 665.6 413 79.4
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 7.1e-189 664.1 413 80.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.6e-188 662.9 411 81.8
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.1e-188 662.5 416 81.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.5e-188 661.8 445 75.5
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 6.0e-188 661.0 409 80.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 81.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.9e-188 660.6 414 79.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 7.9e-188 660.6 409 81.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 79.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 79.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.8e-187 659.4 412 80.1
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 79.0
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.9e-187 658.3 412 81.1
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.1e-186 656.8 413 79.7
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.3e-186 655.2 413 78.9
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 5.7e-186 654.4 413 78.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 9.6e-186 653.7 411 79.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.6e-185 652.9 415 79.8
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 79.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.1e-184 650.2 413 78.7
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.1e-184 650.2 413 78.0
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.8e-184 649.4 414 79.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.8e-184 649.4 413 79.9
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.1e-184 648.3 414 79.2
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 78.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 78.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 78.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 79.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.0e-184 647.1 414 78.0
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.5e-183 646.4 413 77.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.0e-183 646.0 414 79.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 7.6e-183 644.0 411 77.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 7.6e-183 644.0 413 79.4
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.6e-183 644.0 420 77.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.9e-182 642.1 414 79.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 5.0e-182 641.3 414 78.7
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.5e-182 641.0 414 78.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-181 639.4 414 79.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.9e-181 639.4 413 77.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.2e-181 638.6 420 76.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 6.1e-180 634.4 426 76.5
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 6.1e-180 634.4 426 76.5
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-179 633.6 426 76.3
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.3e-179 633.3 414 76.8
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.3e-179 632.5 414 77.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 3.0e-179 632.1 414 76.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 3.7e-177 625.2 410 77.3
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.2e-175 620.2 411 74.9
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.0e-175 619.4 414 76.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.9e-174 615.5 438 71.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 5.0e-174 614.8 415 74.0
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.1e-172 609.4 429 72.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.0e-171 607.1 415 73.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.0e-170 602.8 413 70.5
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-170 602.1 415 72.5
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 7.4e-170 600.9 414 74.2
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 8.2e-169 597.4 375 80.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 8.2e-169 597.4 371 80.9
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 2.4e-168 595.9 416 74.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.4e-160 569.3 410 69.8
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.1e-160 568.5 414 70.8
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 7.0e-160 567.8 410 71.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.6e-156 556.6 412 70.1
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.3e-154 548.9 410 66.6
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.7e-154 548.1 325 84.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 7.5e-154 547.7 371 75.5
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-151 540.0 418 68.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 6.5e-150 534.6 485 61.4
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.1e-144 515.4 398 64.3
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.4e-144 515.0 411 65.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.2e-141 505.8 405 60.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.5e-138 496.9 412 61.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-135 487.3 282 85.5
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.9e-135 485.0 282 85.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.0e-134 484.2 297 80.8
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 6.6e-134 481.5 305 78.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.3e-123 446.4 257 86.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.8e-115 420.2 256 80.9
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.1e-112 409.1 314 67.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.1e-109 401.0 285 70.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-107 393.7 313 66.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-101 372.9 301 67.8
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.3e-101 372.5 191 95.8
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-99 366.3 283 67.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.0e-98 363.6 415 46.7
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-78 297.4 238 64.7
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.0e-78 296.6 200 75.0
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.1e-71 273.9 173 77.5
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.8e-70 270.8 184 70.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-69 268.1 199 67.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.9e-63 245.4 204 63.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.3e-62 244.6 404 36.1
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.2e-56 223.0 131 84.0
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 7.2e-56 222.2 237 51.9
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 7.9e-55 218.8 318 35.8
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 6.7e-54 215.7 400 32.2
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 4.1e-51 206.5 121 81.0
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-47 194.1 126 74.6
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-43 181.4 101 86.1
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-41 174.1 199 54.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.7e-37 159.5 161 58.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-36 157.9 177 54.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-35 154.5 83 89.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.2e-32 143.3 414 29.2
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.1e-31 141.0 107 59.8
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.6e-31 140.2 114 62.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.8e-30 137.9 69 94.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 7.7e-26 122.5 115 58.3
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.5e-18 96.7 51 90.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.3e-17 95.1 114 54.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.9e-17 94.0 143 43.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.9e-17 94.0 99 53.5
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.0e-17 93.2 154 38.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.8e-15 87.4 146 41.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 9.8e-13 79.0 53 77.4
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-12 77.4 51 72.5
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 9.2e-11 72.4 57 64.9
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-09 67.4 81 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 6.6e-09 66.2 38 84.2
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.8e-06 56.2 71 47.9


User provided reference genes

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