Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.1e-97 359.8 165 100.0
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 5.4e-63 244.6 144 80.6
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.5e-60 236.5 165 70.3
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.2e-59 233.4 166 71.1
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.4e-57 225.3 165 68.5
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.9e-53 211.8 165 63.6
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.1e-51 206.1 164 61.6
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.7e-48 196.4 166 59.6
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.7e-48 195.3 144 66.0
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.8e-46 187.6 145 62.1
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.3e-45 186.0 151 59.6
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.0e-45 185.7 148 60.1
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.8e-43 179.1 151 56.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 4.7e-43 178.3 148 58.8
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 8.1e-43 177.6 163 55.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.1e-43 177.6 158 57.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.1e-42 177.2 148 59.5
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.1e-42 177.2 148 59.5
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.4e-42 176.8 151 57.0
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.8e-42 176.4 165 53.9
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 5.2e-42 174.9 147 59.2
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.2e-41 173.7 147 59.2
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.2e-41 173.7 147 59.2
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.2e-41 173.7 146 58.9
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.0e-41 172.9 145 57.9
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.6e-41 172.6 145 57.9
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 4.4e-41 171.8 168 52.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.6e-41 171.0 170 52.4
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.7e-40 169.9 146 56.8
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 2.9e-40 169.1 145 57.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 4.9e-40 168.3 154 55.8
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.4e-40 167.9 145 55.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-39 166.8 146 56.2
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.9e-39 166.4 145 54.5
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.9e-39 166.4 105 74.3
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 4.1e-39 165.2 154 53.9
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.2e-38 163.7 146 56.2
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.1e-38 162.9 154 52.6
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 2.7e-38 162.5 148 58.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-38 161.8 145 53.8
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-38 161.8 145 53.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 6.0e-38 161.4 147 55.1
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 6.0e-38 161.4 77 93.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.0e-37 160.6 147 52.4
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.0e-37 160.6 172 51.2
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-37 160.2 145 55.9
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.7e-37 159.8 155 54.8
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 5.1e-37 158.3 146 58.2
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 5.1e-37 158.3 158 53.8
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 8.6e-37 157.5 158 53.8
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.9e-36 156.4 154 52.6
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.5e-36 156.0 147 53.1
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.3e-36 155.6 154 51.9
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 5.6e-36 154.8 124 62.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 7.3e-36 154.5 148 55.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 9.6e-36 154.1 145 51.7
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 9.6e-36 154.1 154 54.5
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.6e-35 153.3 164 49.4
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.6e-35 153.3 151 53.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-35 153.3 154 51.3
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.6e-35 152.1 158 47.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 4.7e-35 151.8 164 50.6
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.2e-35 151.4 147 52.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.2e-35 151.4 146 52.7
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 6.2e-35 151.4 150 54.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.2e-35 151.4 164 50.0
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.1e-34 150.6 154 49.4
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.1e-34 150.6 126 57.1
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.1e-34 150.6 152 53.3
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.1e-34 150.6 153 51.0
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.4e-34 150.2 148 54.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 4.0e-34 148.7 143 52.4
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 5.2e-34 148.3 115 62.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.2e-33 147.1 152 53.3
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.0e-33 146.4 150 49.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.3e-32 143.7 155 46.5
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-32 143.7 162 48.8
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.7e-32 143.3 151 49.7
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.2e-32 142.9 155 45.2
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.2e-32 142.9 155 45.2
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 6.4e-32 141.4 153 51.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 8.4e-32 141.0 150 50.7
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.9e-31 139.8 145 48.3
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-31 139.8 142 51.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.4e-31 139.4 175 45.1
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.4e-31 139.4 132 51.5
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.2e-31 139.0 155 43.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 3.2e-31 139.0 155 43.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-31 138.3 162 49.4
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 7.1e-31 137.9 154 46.1
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.1e-31 137.9 138 50.0
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.1e-31 137.9 138 50.0
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 9.3e-31 137.5 153 45.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.2e-30 137.1 155 45.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.1e-30 136.3 128 53.1
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-30 136.0 162 48.8
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.7e-30 136.0 123 55.3
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.7e-30 136.0 154 44.2
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.6e-30 135.2 148 50.7
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.8e-30 134.4 154 50.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.0e-29 134.0 155 45.2
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.0e-29 134.0 127 52.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.0e-29 134.0 154 47.4
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.3e-29 132.9 155 45.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 3.0e-29 132.5 154 42.9
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 5.1e-29 131.7 155 45.2
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-29 131.7 147 50.3
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.3e-28 127.9 156 44.9
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-27 126.7 155 45.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.6e-27 126.7 154 47.4
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 3.6e-27 125.6 155 45.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 3.6e-27 125.6 155 45.2
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 3.1e-26 122.5 199 36.7
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 5.3e-26 121.7 145 46.2
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 6.9e-26 121.3 177 40.7
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.4e-25 119.0 167 43.1
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 3.4e-25 119.0 175 40.0
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.6e-25 117.9 173 41.6
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.2e-24 116.3 95 57.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.2e-24 116.3 131 42.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.8e-24 115.5 166 39.2
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-21 107.1 144 45.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.0e-21 105.9 180 38.9
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.9e-21 105.5 148 45.3
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.5e-20 103.6 124 44.4
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-20 102.8 110 52.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.3e-20 102.4 129 45.0
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 7.4e-20 101.3 192 37.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.1e-19 99.8 157 36.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 3.6e-19 99.0 144 39.6
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.8e-19 98.6 146 39.0
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.8e-18 96.7 150 39.3
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.8e-18 96.7 151 41.1
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.1e-18 95.9 110 50.0
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 8.4e-16 87.8 90 48.9
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.3e-15 84.3 125 37.6
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 2.3e-13 79.7 137 36.5
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 5.6e-12 75.1 124 40.3
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.1e-10 69.3 101 42.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 4.2e-07 58.9 84 39.3


User provided reference genes

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