Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 6.3e-31 136.7 66 100.0
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 4.4e-24 114.0 55 100.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.4e-24 114.0 55 100.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 4.4e-24 114.0 55 100.0
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.4e-24 114.0 55 100.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.7e-24 113.6 55 98.2
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 7.5e-24 113.2 55 96.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.5e-24 113.2 57 91.2
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 7.5e-24 113.2 55 96.4
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 96.4
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 98.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 9.8e-24 112.8 55 94.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.3e-23 112.5 55 96.4
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.3e-23 112.5 55 96.4
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.3e-23 112.5 55 96.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.3e-23 112.5 55 94.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 96.4
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 96.4
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 96.4
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 96.4
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.7e-23 112.1 55 94.5
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.2e-23 111.7 56 94.6
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 2.2e-23 111.7 55 96.4
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 2.2e-23 111.7 55 96.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.2e-23 111.7 55 96.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.8e-23 111.3 55 94.5
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 94.5
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.7e-23 110.9 55 92.7
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 6.3e-23 110.2 55 92.7
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 8.3e-23 109.8 55 90.9
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.4e-22 109.0 55 92.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-22 109.0 55 89.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-22 109.0 55 90.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.4e-22 108.2 55 90.9
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 2.4e-22 108.2 55 90.9
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-22 108.2 55 90.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.4e-22 108.2 55 90.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.4e-22 108.2 55 89.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 3.1e-22 107.8 55 89.1
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.1e-22 107.8 55 90.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.1e-22 107.8 55 90.9
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 3.1e-22 107.8 55 90.9
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.4e-22 107.1 55 89.1
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 5.4e-22 107.1 60 88.3
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 7.0e-22 106.7 55 89.1
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.2e-21 105.9 54 94.4
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.6e-21 105.5 55 92.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.6e-21 105.5 54 92.6
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 3.5e-21 104.4 54 92.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.5e-21 104.4 54 90.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.5e-21 104.4 54 92.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.7e-20 102.1 54 88.9
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 5.0e-20 100.5 54 90.7
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.4e-17 92.4 55 83.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 4.0e-17 90.9 55 67.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.7e-12 75.5 37 97.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.7e-12 75.5 37 97.3
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 6.6e-12 73.6 41 85.4
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.1e-11 72.8 41 82.9
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.2e-10 69.3 54 53.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-09 65.9 37 89.2
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 4.0e-09 64.3 56 55.4


User provided reference genes

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