Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.9e-119 432.6 223 100.0
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.7e-112 409.5 223 92.4
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.6e-110 402.9 223 92.8
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 7.4e-108 394.0 223 89.2
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 3.7e-107 391.7 225 89.8
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.5e-105 384.8 223 87.4
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.8e-104 381.7 223 85.2
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.5e-103 379.0 223 85.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 5.5e-103 377.9 223 84.3
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.7e-102 375.6 223 85.7
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 5.7e-100 367.9 221 81.9
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 2.2e-96 355.9 222 79.7
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 5.0e-96 354.8 222 80.2
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-95 353.6 222 80.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.9e-80 302.4 346 51.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.6e-78 296.6 222 68.5
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.6e-78 295.4 223 67.7
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.8e-77 293.1 223 66.8
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.8e-77 293.1 223 65.9
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.0e-77 292.0 222 66.2
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.7e-76 288.1 222 65.3
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.4e-74 283.5 224 65.2
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 3.1e-74 282.3 223 64.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 4.1e-74 282.0 223 64.6
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 5.4e-74 281.6 223 65.5
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-74 281.2 224 64.7
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 9.2e-74 280.8 224 66.1
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 9.2e-74 280.8 223 64.1
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.2e-73 280.4 222 65.8
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-73 280.4 224 65.2
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 63.8
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 63.8
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 63.8
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-72 277.3 223 62.3
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.4
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.4
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 63.4
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.6e-72 274.6 224 63.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.1e-71 273.9 223 61.9
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 5.6e-71 271.6 223 64.1
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.2e-70 270.4 223 63.2
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.8e-70 269.2 208 66.8
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 8.0e-70 267.7 223 61.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 8.0e-70 267.7 220 61.8
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.0e-69 267.3 223 64.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.8e-69 266.5 224 62.5
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.0e-69 265.8 214 62.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 6.8e-69 264.6 227 63.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.9e-69 264.2 220 65.0
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.2e-68 263.8 213 62.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.2e-68 263.8 223 61.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.0e-68 263.1 223 61.9
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.0e-68 263.1 168 81.0
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.7e-67 260.0 202 66.8
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 4.9e-67 258.5 223 61.4
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.4e-67 258.1 224 60.7
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 8.3e-67 257.7 223 61.4
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.4e-66 256.9 224 60.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 3.2e-66 255.8 226 61.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 5.4e-66 255.0 225 61.3
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 7.0e-66 254.6 223 61.4
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 4.6e-65 251.9 225 59.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 5.9e-65 251.5 227 61.7
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 5.9e-65 251.5 223 59.2
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 7.8e-65 251.1 223 61.0
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 3.0e-64 249.2 222 58.6
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.0e-64 249.2 223 60.5
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.6e-64 247.7 223 58.3
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.1e-63 247.3 226 61.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.9e-63 246.5 222 56.8
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.3e-63 245.7 221 60.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.2e-62 243.8 222 58.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.6e-62 243.4 222 57.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.1e-62 243.0 221 58.8
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 6.2e-62 241.5 223 57.8
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 6.2e-62 241.5 224 57.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 6.8e-61 238.0 202 64.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 8.9e-61 237.7 225 59.1
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.5e-60 236.9 225 57.8
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.0e-60 236.5 224 57.1
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.0e-60 236.5 253 53.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 2.6e-60 236.1 188 67.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.4e-60 235.7 224 56.7
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 4.4e-60 235.3 224 56.7
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 7.5e-60 234.6 215 60.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.5e-60 234.6 215 60.0
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 9.8e-60 234.2 218 56.4
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.7e-59 233.4 202 62.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-59 232.6 219 58.0
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.9e-59 232.6 224 56.2
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.9e-59 231.9 222 55.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.9e-59 231.9 222 55.9
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 6.4e-59 231.5 222 55.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 2.4e-58 229.6 222 55.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.1e-58 228.8 235 55.7
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.1e-58 228.8 222 55.0
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 7.0e-58 228.0 232 56.5
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.2e-57 227.3 206 61.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.6e-57 226.9 239 55.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.7e-57 226.1 234 55.6
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 6.0e-57 224.9 229 56.3
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 7.8e-57 224.6 230 53.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 7.8e-57 224.6 269 49.4
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 7.8e-57 224.6 234 50.4
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-56 224.2 196 63.3
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-56 224.2 196 62.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.3e-56 223.8 259 52.5
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.3e-56 223.0 200 62.5
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 8.6e-56 221.1 259 52.9
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.5e-55 220.3 209 57.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.3e-55 219.2 228 54.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 5.6e-55 218.4 208 58.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.6e-55 218.4 206 60.2
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-54 216.5 170 65.9
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.2e-54 214.9 277 48.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.4e-53 213.8 186 58.6
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.1e-53 212.6 184 63.0
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 8.9e-53 211.1 199 59.8
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.0e-48 197.6 257 47.9
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 2.3e-48 196.4 219 54.3
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-45 187.2 151 63.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.3e-45 186.4 198 53.0
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.0e-45 185.7 193 57.0
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.4e-44 182.6 159 60.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.8e-44 181.8 151 64.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.1e-38 163.3 138 64.5
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 8.1e-38 161.4 143 64.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-35 153.7 147 59.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 4.9e-35 152.1 152 55.9
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 8.4e-35 151.4 139 59.0
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.4e-34 150.6 179 53.6
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.0e-33 145.2 128 62.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.6e-32 141.7 102 75.5
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.8e-30 135.6 135 57.0
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.0e-28 130.2 192 40.1
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 9.9e-28 127.9 187 44.4
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 8.4e-27 124.8 132 53.8
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.2e-25 120.9 94 62.8
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.0e-24 116.3 202 36.6
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 3.9e-24 115.9 205 37.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 9.0e-21 104.8 93 59.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.3e-19 100.9 94 56.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.4e-18 96.7 154 42.9
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.5e-17 92.8 95 54.7
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.0e-16 89.7 58 65.5
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 6.7e-16 88.6 95 52.6
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 3.1e-13 79.7 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 9.0e-13 78.2 146 35.6
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.5e-12 77.4 60 63.3
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 1.7e-11 73.9 93 53.8
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.5e-07 60.1 190 30.0


User provided reference genes

Program Settings