Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33189 Trifolium pratense HOM05D000228 ORTHO05D005112 1.9e-59 232.3 111 100.0
TPR.G28490 Trifolium pratense HOM05D000228 ORTHO05D005112 1.2e-26 123.2 90 73.3
Ca_27020_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 3.4e-21 105.1 87 62.1
Psat7g085520 Pisum sativum HOM05D000228 ORTHO05D005112 3.4e-21 105.1 87 62.1
Ca_25862_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 7.6e-21 104.0 87 60.9
Medtr4g086290 Medicago truncatula HOM05D000228 ORTHO05D005112 1.1e-19 100.1 87 57.5
Lj5g0016256 Lotus japonicus HOM05D000228 ORTHO05D005112 2.5e-19 99.0 87 57.5
arahy.Tifrunner.gnm1.ann1.L2VW3R Arachis hypogaea HOM05D000228 ORTHO05D005112 1.8e-17 92.8 87 58.6
arahy.Tifrunner.gnm1.ann1.7V0RSZ Arachis hypogaea HOM05D000228 ORTHO05D005112 2.3e-17 92.4 87 58.6
Lalb_Chr09g0325001 Lupinus albus HOM05D000228 ORTHO05D005112 3.9e-17 91.7 87 56.3
arahy.Tifrunner.gnm1.ann1.02EG99 Arachis hypogaea HOM05D000228 ORTHO05D005112 1.1e-16 90.1 87 57.5
Lalb_Chr16g0380371 Lupinus albus HOM05D000228 ORTHO05D005112 1.5e-16 89.7 87 55.2
arahy.Tifrunner.gnm1.ann1.BY74GT Arachis hypogaea HOM05D000228 ORTHO05D005112 1.9e-16 89.4 87 56.3
Glyma.10G095200 Glycine max HOM05D000228 ORTHO05D005112 2.2e-15 85.9 87 52.9
Phvul.007G255400 Phaseolus vulgaris HOM05D000228 ORTHO05D005112 8.2e-15 84.0 87 50.6
GSVIVG01033327001 Vitis vinifera HOM05D000228 ORTHO05D005112 3.1e-14 82.0 87 50.6
QL05p021274 Quercus lobata HOM05D000228 ORTHO05D005112 4.1e-14 81.6 76 52.6
Actinidia09359 Actinidia chinensis HOM05D000228 ORTHO05D005112 5.3e-14 81.3 76 55.3
MD12G1066600 Malus domestica HOM05D000228 ORTHO05D005112 5.3e-14 81.3 76 52.6
VMungo0720G2391 Vigna mungo HOM05D000228 ORTHO05D005112 6.9e-14 80.9 87 48.3
Sc20g0005060 Simmondsia chinensis HOM05D000228 ORTHO05D005112 2.6e-13 79.0 87 49.4
Hund24743 Selenicereus undatus HOM05D000228 ORTHO05D005112 3.4e-13 78.6 87 44.8
CSS0039942 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D005112 1.0e-12 77.0 87 48.3
CANSAT80G1181 Cannabis sativa HOM05D000228 ORTHO05D005112 1.3e-12 76.6 87 48.3
Dinv36249 Davidia involucrata HOM05D000228 ORTHO05D005112 1.7e-12 76.3 87 49.4
Prupe.7G067700 Prunus persica HOM05D000228 ORTHO05D005112 1.7e-12 76.3 76 50.0
vmacro20114 Vaccinium macrocarpon HOM05D000228 ORTHO05D005112 1.7e-12 76.3 87 49.4
EL10Ac2g03322 Beta vulgaris HOM05D000228 ORTHO05D005112 2.2e-12 75.9 87 46.0
Ciclev10004132m.g Citrus clementina HOM05D000228 ORTHO05D005112 2.2e-12 75.9 87 48.3
Duzib128G0079 Durio zibethinus HOM05D000228 ORTHO05D005112 2.2e-12 75.9 87 48.3
SalBow6G4505 Salvia bowleyana HOM05D000228 ORTHO05D005112 2.9e-12 75.5 87 46.0
CDE04G1016 Ceratophyllum demersum HOM05D000228 ORTHO05D005112 3.8e-12 75.1 76 50.0
EL10Ac1g00646 Beta vulgaris HOM05D000228 ORTHO05D005112 5.0e-12 74.7 87 48.3
Gohir.A02G106900 Gossypium hirsutum HOM05D000228 ORTHO05D005112 5.0e-12 74.7 87 49.4
Lsat_1_v5_gn_9_27541 Lactuca sativa HOM05D000228 ORTHO05D005112 5.0e-12 74.7 87 47.1
Rhsim03G0012300 Rhododendron simsii HOM05D000228 ORTHO05D005112 5.0e-12 74.7 87 47.1
Cc06_g16580 Coffea canephora HOM05D000228 ORTHO05D005112 6.5e-12 74.3 87 47.1
Lj7A597G62 Lonicera japonica HOM05D000228 ORTHO05D005112 6.5e-12 74.3 87 48.3
Solyc10g080350.3 Solanum lycopersicum HOM05D000228 ORTHO05D005112 6.5e-12 74.3 76 44.7
Sopen10g030910 Solanum pennellii HOM05D000228 ORTHO05D005112 6.5e-12 74.3 76 44.7
ECA247G1984 Erigeron canadensis HOM05D000228 ORTHO05D005112 1.1e-11 73.6 87 46.0
CiPaw.09G034800 Carya illinoinensis HOM05D000228 ORTHO05D005112 1.4e-11 73.2 87 46.0
Eucgr.K01811 Eucalyptus grandis HOM05D000228 ORTHO05D005112 1.4e-11 73.2 87 47.1
Sed0022055 Sechium edule HOM05D000228 ORTHO05D005112 1.4e-11 73.2 88 47.7
Thecc.05G162700 Theobroma cacao HOM05D000228 ORTHO05D005112 1.4e-11 73.2 87 49.4
TAR636G1992 Trochodendron aralioides HOM05D000228 ORTHO05D005112 1.4e-11 73.2 76 51.3
Ah.13g070900 Amaranthus hybridus HOM05D000228 ORTHO05D005112 1.9e-11 72.8 77 48.1
Gohir.D03G070500 Gossypium hirsutum HOM05D000228 ORTHO05D005112 2.5e-11 72.4 87 48.3
Gorai.003G089300 Gossypium raimondii HOM05D000228 ORTHO05D005112 2.5e-11 72.4 87 48.3
EL10Ac1g00656 Beta vulgaris HOM05D000228 ORTHO05D005112 3.2e-11 72.0 87 46.0
MELO3C009661.2 Cucumis melo HOM05D000228 ORTHO05D005112 3.2e-11 72.0 88 47.7
CsaV3_3G039160 Cucumis sativus L. HOM05D000228 ORTHO05D005112 3.2e-11 72.0 88 47.7
Sp5g04970 Schrenkiella parvula HOM05D000228 ORTHO05D005112 3.2e-11 72.0 87 47.1
Atru.chr1.1030 Acer truncatum HOM05D000228 ORTHO05D005112 4.2e-11 71.6 87 44.8
Aa31sc1187G20 Aethionema arabicum HOM05D000228 ORTHO05D005112 4.2e-11 71.6 87 44.8
Aa31sc992G30 Aethionema arabicum HOM05D000228 ORTHO05D005112 4.2e-11 71.6 87 44.8
AUR62032979 Chenopodium quinoa HOM05D000228 ORTHO05D005112 7.2e-11 70.9 76 48.7
Haze_19911 Corylus avellana HOM05D000228 ORTHO05D005112 7.2e-11 70.9 87 43.7
Thhalv10005738m.g Eutrema salsugineum HOM05D000228 ORTHO05D005112 7.2e-11 70.9 87 46.0
HanXRQChr10g0290381 Helianthus annuus HOM05D000228 ORTHO05D005112 7.2e-11 70.9 87 46.0
BcaC07g40146 Brassica carinata HOM05D000228 ORTHO05D005112 9.4e-11 70.5 87 47.1
CAN.G128.23 Capsicum annuum HOM05D000228 ORTHO05D005112 9.4e-11 70.5 87 40.2
TWI75G0708 Tripterygium wilfordii HOM05D000228 ORTHO05D005112 9.4e-11 70.5 87 46.0
ClCG10G017230 Citrullus lanatus HOM05D000228 ORTHO05D005112 1.2e-10 70.1 88 46.6
COL.COLO4_28678 Corchorus olitorius HOM05D000228 ORTHO05D005112 1.2e-10 70.1 76 48.7
Migut.J01785 Erythranthe guttata HOM05D000228 ORTHO05D005112 1.2e-10 70.1 87 44.8
Nn7g37022 Nelumbo nucifera HOM05D000228 ORTHO05D005112 1.2e-10 70.1 87 43.7
FvH4_5g35030 Fragaria vesca HOM05D000228 ORTHO05D005112 1.6e-10 69.7 87 47.1
MSTRG.931 Avicennia marina HOM05D000228 ORTHO05D005112 2.1e-10 69.3 87 43.7
AT3G57660 Arabidopsis thaliana HOM05D000228 ORTHO05D005112 3.6e-10 68.6 87 44.8
PSO339G5840 Papaver somniferum HOM05D000228 ORTHO05D005112 3.6e-10 68.6 87 43.7
PSO384G0893 Papaver somniferum HOM05D000228 ORTHO05D005112 3.6e-10 68.6 87 43.7
PSO384G4008 Papaver somniferum HOM05D000228 ORTHO05D005112 3.6e-10 68.6 87 43.7
PGR042G3811 Punica granatum HOM05D000228 ORTHO05D005112 3.6e-10 68.6 87 41.4
BcaC08g44860 Brassica carinata HOM05D000228 ORTHO05D005112 4.6e-10 68.2 87 46.0
C06p24710 Brassica napus HOM05D000228 ORTHO05D005112 4.6e-10 68.2 87 46.0
Oeu004020.1 Olea europaea HOM05D000228 ORTHO05D005112 4.6e-10 68.2 87 44.8
THA.LOC104818848 Tarenaya hassleriana HOM05D000228 ORTHO05D005112 4.6e-10 68.2 87 44.8
Carub.0005s2449 Capsella rubella HOM05D000228 ORTHO05D005112 6.1e-10 67.8 76 46.1
CARHR167900 Cardamine hirsuta HOM05D000228 ORTHO05D005112 6.1e-10 67.8 87 43.7
Manes.09G029200 Manihot esculenta HOM05D000228 ORTHO05D005112 7.9e-10 67.4 76 47.4
AL5G39280 Arabidopsis lyrata HOM05D000228 ORTHO05D005112 1.0e-09 67.0 87 43.7
A09p50510 Brassica napus HOM05D000228 ORTHO05D005112 1.4e-09 66.6 87 46.0
C08p33230 Brassica napus HOM05D000228 ORTHO05D005112 1.4e-09 66.6 87 46.0
BraA09t40502Z Brassica rapa HOM05D000228 ORTHO05D005112 1.4e-09 66.6 87 46.0
AUR62039171 Chenopodium quinoa HOM05D000228 ORTHO05D005112 1.4e-09 66.6 87 41.4
AUR62043125 Chenopodium quinoa HOM05D000228 ORTHO05D005112 1.4e-09 66.6 87 41.4
BraA07t30016Z Brassica rapa HOM05D000228 ORTHO05D005112 2.3e-09 65.9 87 44.8
Nitab4.5_0001347g0020 Nicotiana tabacum HOM05D000228 ORTHO05D005112 2.3e-09 65.9 91 38.5
BcaC07g40356 Brassica carinata HOM05D000228 ORTHO05D005112 3.0e-09 65.5 87 44.8
BolC8t50924H Brassica oleracea HOM05D000228 ORTHO05D005112 3.0e-09 65.5 87 44.8
SGA_v2.0_scaffold105G30449 Striga asiatica HOM05D000228 ORTHO05D005112 5.1e-09 64.7 87 43.7
BcaB02g07586 Brassica carinata HOM05D000228 ORTHO05D005112 6.7e-09 64.3 87 43.7
FvH4_5g34330 Fragaria vesca HOM05D000228 ORTHO05D005112 6.7e-09 64.3 87 44.8
FAN09G2168 Fragaria x ananassa HOM05D000228 ORTHO05D005112 6.7e-09 64.3 87 44.8
RcHm_v2.0_Chr3g0481021 Rosa chinensis HOM05D000228 ORTHO05D005112 6.7e-09 64.3 107 41.1
Cfa016860 Carpinus fangiana HOM05D000228 ORTHO05D005112 8.8e-09 63.9 87 41.4
FAN02G2218 Fragaria x ananassa HOM05D000228 ORTHO05D005112 1.1e-08 63.5 87 43.7
FAN05G0345 Fragaria x ananassa HOM05D000228 ORTHO05D005112 1.1e-08 63.5 87 43.7
Aqoxy1G00159 Aquilegia oxysepala HOM05D000228 ORTHO05D005112 1.5e-08 63.2 87 41.4
FvH4_6g23210 Fragaria vesca HOM05D000228 ORTHO05D005112 1.5e-08 63.2 87 43.7
FAN14G5358 Fragaria x ananassa HOM05D000228 ORTHO05D005112 1.5e-08 63.2 87 43.7
SGA_v2.0_scaffold522G52702 Striga asiatica HOM05D000228 ORTHO05D005112 2.5e-08 62.4 87 42.5
unitig_32.g11071 Utricularia gibba HOM05D000228 ORTHO05D005112 2.5e-08 62.4 87 42.5
Peaxi162Scf03258g00019 Petunia axillaris HOM05D000228 ORTHO05D005112 5.7e-08 61.2 97 35.1
A07p23580 Brassica napus HOM05D000228 ORTHO05D005112 7.4e-08 60.8 87 42.5
Sabra06G0039200 Salix brachista HOM05D000228 ORTHO05D005112 9.7e-08 60.5 76 46.1
Potri.006G055300 Populus trichocarpa HOM05D000228 ORTHO05D005112 1.3e-07 60.1 76 46.1
ATR0605G316 Amborella trichopoda HOM05D000228 ORTHO05D005112 3.7e-07 58.5 85 41.2
DCAR_020471 Daucus carota HOM05D000228 ORTHO05D005112 1.1e-06 57.0 75 44.0
Lsat_1_v5_gn_5_45501 Lactuca sativa HOM05D000228 ORTHO05D005112 1.4e-06 56.6 53 52.8


User provided reference genes

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