Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.0e-228 795.4 394 100.0
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.2e-217 759.6 394 95.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.9e-215 752.3 398 95.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.2e-214 749.6 416 90.1
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 9.1e-202 706.8 398 87.9
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.7e-200 702.6 400 87.0
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 2.5e-199 698.7 398 87.7
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 9.5e-199 696.8 401 85.8
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.0e-193 679.1 369 89.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 4.3e-191 671.4 396 84.8
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 4.0e-189 664.8 439 77.4
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 7.5e-188 660.6 439 77.2
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.2e-185 653.3 413 80.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.0e-184 650.2 403 80.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.5e-183 646.4 357 88.8
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.9e-183 646.0 350 89.1
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 2.5e-183 645.6 356 88.5
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 5.6e-183 644.4 353 89.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 7.3e-183 644.0 396 81.1
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.6e-182 642.9 372 83.6
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.6e-182 642.9 398 79.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.6e-182 642.9 391 82.4
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 2.1e-182 642.5 357 87.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 3.6e-182 641.7 354 87.3
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 4.7e-182 641.3 381 82.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.0e-181 640.2 357 86.6
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 2.3e-181 639.0 400 81.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.0e-181 638.3 400 80.8
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.2e-181 637.9 406 80.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 6.8e-181 637.5 398 79.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 8.9e-181 637.1 362 85.1
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.5e-180 636.3 357 86.3
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 3.4e-180 635.2 359 84.7
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 4.4e-180 634.8 424 76.9
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 5.8e-180 634.4 353 86.4
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.7e-179 632.9 354 85.3
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.7e-179 632.9 354 85.3
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.9e-179 632.1 416 78.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 3.7e-179 631.7 359 83.8
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 4.9e-179 631.3 409 77.3
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.4e-178 629.8 409 77.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.4e-178 629.8 353 84.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.4e-178 629.8 404 80.0
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.9e-178 629.4 413 77.7
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.2e-178 628.6 351 85.2
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 5.4e-178 627.9 416 77.4
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 9.2e-178 627.1 417 76.7
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.2e-177 626.7 359 85.0
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 3.5e-177 625.2 456 71.9
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 4.6e-177 624.8 357 84.3
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.3e-176 623.2 359 83.3
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.3e-176 623.2 356 84.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.7e-176 622.9 353 85.0
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.7e-176 622.9 396 79.8
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 3.9e-176 621.7 381 82.4
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 1.1e-175 620.2 410 76.3
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 4.3e-175 618.2 380 79.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.2e-174 616.7 384 78.6
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.8e-174 615.5 403 77.7
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 6.8e-173 610.9 409 76.0
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.5e-172 609.8 377 79.8
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.0e-172 609.4 367 81.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 2.6e-172 609.0 381 79.3
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 4.4e-172 608.2 410 76.1
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 4.4e-172 608.2 384 79.4
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 9.8e-172 607.1 408 77.9
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.3e-171 606.7 355 82.0
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 8.3e-171 604.0 357 81.8
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.4e-170 603.2 342 86.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.4e-170 603.2 363 83.2
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.7e-168 596.3 384 77.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 5.1e-168 594.7 396 74.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 6.6e-168 594.3 404 75.2
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 2.5e-167 592.4 407 74.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.3e-167 592.0 357 81.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 9.5e-167 590.5 395 76.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.1e-166 589.3 362 80.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.8e-166 589.0 355 80.3
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.8e-166 589.0 407 74.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 3.6e-166 588.6 408 74.3
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 6.2e-166 587.8 357 79.8
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.8e-165 586.3 336 83.6
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 2.3e-165 585.9 352 81.8
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.1e-165 585.5 501 61.5
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 5.2e-165 584.7 370 78.9
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.8e-165 584.3 354 80.2
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.5e-164 583.2 410 73.9
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.5e-164 583.2 391 76.5
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 4.4e-164 581.6 413 72.6
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.9e-163 578.9 351 80.1
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-162 577.0 423 71.9
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.4e-162 575.9 406 74.4
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-161 573.5 327 83.8
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-161 573.5 327 83.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 6.6e-160 567.8 362 77.6
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 3.3e-159 565.5 394 74.1
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.6e-158 562.0 388 72.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 8.1e-158 560.8 352 75.6
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.4e-154 549.3 351 78.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.6e-153 545.0 494 59.9
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 6.0e-153 544.7 389 72.8
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 6.6e-152 541.2 397 67.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 9.9e-148 527.3 356 73.6
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.4e-146 523.5 522 56.3
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.2e-145 520.4 403 69.0
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.7e-145 519.2 570 53.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.1e-143 513.8 368 70.7
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 5.6e-135 485.0 485 55.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 5.1e-120 435.3 409 55.0
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 6.3e-118 428.3 328 66.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.5e-116 423.7 435 56.3
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.0e-111 406.8 209 91.9
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 9.1e-109 397.9 377 53.6
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.5e-108 397.1 203 94.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.9e-106 390.2 376 55.3
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 8.3e-78 295.0 302 49.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.1e-61 239.6 322 40.1
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 5.6e-58 229.2 122 88.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 4.7e-57 226.1 114 93.0
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 9.5e-50 201.8 181 62.4
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 5.1e-43 179.5 111 78.4
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 3.6e-41 173.3 211 51.2
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.6e-33 147.9 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 5.8e-31 139.4 68 94.1
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.0e-27 128.6 75 85.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 9.6e-26 122.1 85 69.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.1e-24 118.6 83 68.7
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 3.4e-23 113.6 80 70.0
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.3e-19 101.7 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.6e-15 87.4 43 93.0
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 2.1e-12 77.8 61 62.3
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 6.0e-12 76.3 43 83.7
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.6e-09 68.2 38 76.3
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 2.2e-09 67.8 70 55.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.3e-08 63.2 62 51.6
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 1.0e-06 58.9 42 61.9


User provided reference genes

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