Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 4.8e-13 76.3 31 100.0
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 1.4e-12 74.7 31 96.8
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 4.0e-12 73.2 31 96.8
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 6.9e-12 72.4 31 93.5
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 6.9e-12 72.4 31 93.5
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 9.0e-12 72.0 31 93.5
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.2e-11 71.6 31 90.3
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.2e-11 71.6 31 90.3
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 1.2e-11 71.6 31 90.3
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.2e-11 71.6 31 90.3
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.2e-11 71.6 31 90.3
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.5e-11 71.2 31 90.3
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.0e-11 70.9 31 90.3
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 2.0e-11 70.9 31 90.3
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 2.6e-11 70.5 31 90.3
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 2.6e-11 70.5 31 90.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 2.6e-11 70.5 31 90.3
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 3.4e-11 70.1 31 87.1
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 4.5e-11 69.7 31 87.1
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 7.6e-11 68.9 31 87.1
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 7.6e-11 68.9 31 87.1
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.3e-10 68.2 31 83.9
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.3e-10 68.2 31 83.9
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.3e-10 68.2 31 87.1
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 1.3e-10 68.2 31 83.9
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.3e-10 68.2 31 83.9
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.7e-10 67.8 31 83.9
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 2.9e-10 67.0 31 83.9
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.8e-10 66.6 31 83.9
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 6.4e-10 65.9 31 83.9
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 6.4e-10 65.9 32 87.5
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 6.4e-10 65.9 31 83.9
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.4e-10 65.9 31 80.6
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 6.4e-10 65.9 31 80.6
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 1.1e-09 65.1 31 80.6
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.9e-09 64.3 31 80.6
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.9e-09 64.3 31 80.6
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 3.2e-09 63.5 31 80.6
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 2.1e-08 60.8 27 81.5
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 6.0e-08 59.3 31 74.2
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 3.9e-07 56.6 31 71.0
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 3.3e-06 53.5 31 67.7


User provided reference genes

Program Settings