Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 0.0e+00 1123.6 604 100.0
TPR.G18519 Trifolium pratense HOM05D009527 ORTHO05D013850 3.2e-73 280.4 281 57.7
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 4.1e-68 263.5 232 65.9
TPR.G32057 Trifolium pratense HOM05D061576 ORTHO05D412474 1.7e-66 258.1 231 64.1
TPR.G18252 Trifolium pratense HOM05D002500 ORTHO05D002587 1.6e-32 145.2 187 49.2
TPR.G29332 Trifolium pratense HOM05D000106 ORTHO05D011406 3.9e-26 124.0 79 81.0
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 2.1e-19 101.7 237 31.2
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.0e-18 99.4 237 29.5
TPR.G39050 Trifolium pratense HOM05D011284 ORTHO05D018089 1.0e-18 99.4 241 44.8
Medtr3g116255 Medicago truncatula HOM05D029664 ORTHO05D036753 7.6e-14 83.2 257 33.5
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.4e-12 78.2 137 35.8
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 2.4e-12 78.2 137 35.0
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 3.2e-12 77.8 328 25.3
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 2.1e-11 75.1 149 32.2
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 4.6e-11 73.9 138 31.2
TPR.G38395 Trifolium pratense HOM05D009527 ORTHO05D013850 4.6e-11 73.9 106 43.4
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.8e-11 73.2 254 25.6
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.0e-10 72.8 148 31.1
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.3e-10 72.4 151 33.8
TPR.G8928 Trifolium pratense HOM05D026048 ORTHO05D026205 1.3e-10 72.4 128 40.6
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.7e-10 72.0 292 26.4
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-10 71.6 254 25.2
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 3.9e-10 70.9 134 32.1
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 5.1e-10 70.5 137 31.4
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.6e-10 70.1 246 25.2
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.1e-09 69.3 137 32.8
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.9e-09 68.6 143 31.5
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 2.5e-09 68.2 138 31.9
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 3.3e-09 67.8 138 32.6
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 3.3e-09 67.8 140 32.9
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 4.3e-09 67.4 143 30.8
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.3e-09 67.4 254 25.2
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 5.6e-09 67.0 130 32.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 5.6e-09 67.0 168 29.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 5.6e-09 67.0 143 30.1
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 5.6e-09 67.0 138 30.4
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 7.3e-09 66.6 148 29.7
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 7.3e-09 66.6 138 30.4
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 7.3e-09 66.6 141 29.8
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.3e-08 65.9 157 31.2
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 1.3e-08 65.9 269 24.5
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.1e-08 65.1 134 29.9
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.1e-08 65.1 131 32.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.1e-08 65.1 134 31.3
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.8e-08 64.7 143 29.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 3.6e-08 64.3 138 27.5
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.6e-08 64.3 134 29.1
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 3.6e-08 64.3 138 30.4
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 6.2e-08 63.5 125 31.2
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.2e-08 63.5 143 31.5
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 6.2e-08 63.5 134 29.1
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 6.2e-08 63.5 140 30.7
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 8.1e-08 63.2 138 31.9
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.1e-08 63.2 138 31.9
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.1e-07 62.8 132 32.6
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.1e-07 62.8 134 28.4
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 1.4e-07 62.4 122 31.1
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 1.8e-07 62.0 134 32.1
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.8e-07 62.0 134 30.6
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 2.4e-07 61.6 138 31.2
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.4e-07 61.6 134 27.6
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.1e-07 61.2 124 30.6
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 3.1e-07 61.2 133 29.3
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 3.1e-07 61.2 202 25.7
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 4.0e-07 60.8 145 29.0
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 4.0e-07 60.8 145 29.0
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 4.0e-07 60.8 134 29.1
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 4.0e-07 60.8 155 29.7
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 4.0e-07 60.8 149 26.8
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 5.3e-07 60.5 133 29.3
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 5.3e-07 60.5 134 28.4
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 5.3e-07 60.5 129 32.6
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.9e-07 60.1 146 27.4
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 6.9e-07 60.1 122 32.8
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 9.0e-07 59.7 143 29.4
TPR.G313 Trifolium pratense HOM05D011284 ORTHO05D412346 9.0e-07 59.7 374 29.7
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 1.2e-06 59.3 130 29.2
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.2e-06 59.3 145 29.0
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.2e-06 59.3 129 31.0
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.2e-06 59.3 134 28.4
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.2e-06 59.3 138 29.7
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.5e-06 58.9 138 28.3
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.5e-06 58.9 134 26.9
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.5e-06 58.9 138 30.4
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 2.0e-06 58.5 130 28.5
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.6e-06 58.2 125 28.8
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 3.4e-06 57.8 138 26.8
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 3.4e-06 57.8 133 26.3
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 3.4e-06 57.8 130 29.2
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 5.8e-06 57.0 141 27.7
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 7.6e-06 56.6 138 29.0
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 9.9e-06 56.2 142 28.9
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 9.9e-06 56.2 142 28.9


User provided reference genes

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