Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 0.0e+00 1267.3 700 100.0
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 1.3e-304 1049.3 689 80.1
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 1.7e-288 995.7 676 79.4
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 5.0e-267 924.5 678 72.9
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 5.1e-256 887.9 675 71.1
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 6.7e-256 887.5 678 71.1
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 1.3e-254 883.2 676 71.2
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 4.8e-230 801.6 678 65.6
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 4.8e-230 801.6 678 65.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 9.2e-197 691.0 597 64.3
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 1.6e-196 690.3 597 64.2
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 4.6e-196 688.7 667 59.4
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 3.0e-195 686.0 651 59.8
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 1.2e-193 680.6 669 58.9
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 2.0e-191 673.3 649 59.0
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 4.4e-191 672.2 639 60.1
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 2.7e-188 662.9 680 57.4
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 1.3e-187 660.6 587 63.7
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 1.1e-186 657.5 693 58.2
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 1.5e-186 657.1 685 56.5
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 6.8e-184 648.3 686 56.1
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 8.9e-184 647.9 676 56.8
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 2.0e-183 646.7 594 63.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.6e-183 646.4 641 58.5
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-182 643.3 678 57.4
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 2.9e-182 642.9 678 56.3
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 2.9e-182 642.9 638 60.2
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 4.9e-182 642.1 646 56.5
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 6.4e-182 641.7 688 54.9
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 2.7e-180 636.3 683 56.8
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 6.0e-180 635.2 684 54.1
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 6.0e-180 635.2 620 60.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 1.0e-179 634.4 669 55.5
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 1.0e-179 634.4 661 56.7
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 1.0e-179 634.4 606 60.9
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 1.3e-179 634.0 631 58.2
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 1.7e-179 633.6 638 58.9
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 1.7e-179 633.6 649 55.9
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 2.3e-179 633.3 607 60.3
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 3.0e-179 632.9 612 58.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 3.0e-179 632.9 688 54.7
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.9e-178 630.2 682 55.1
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 7.3e-178 628.2 667 56.2
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 9.6e-178 627.9 597 60.6
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 2.8e-177 626.3 688 55.2
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 4.8e-177 625.5 666 54.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 8.1e-177 624.8 601 60.2
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 8.1e-177 624.8 696 54.6
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 8.1e-177 624.8 595 59.2
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.4e-176 624.0 641 58.0
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 9.0e-176 621.3 649 55.2
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 7.6e-175 618.2 644 54.7
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 1.3e-174 617.5 649 54.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 1.3e-174 617.5 652 57.5
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 2.2e-174 616.7 644 54.5
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 2.2e-174 616.7 644 54.5
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 6.4e-174 615.1 592 59.3
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 2.4e-173 613.2 644 54.0
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 5.4e-173 612.1 639 54.8
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 7.1e-173 611.7 651 54.2
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 1.6e-172 610.5 606 57.6
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 6.0e-172 608.6 599 57.1
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 3.0e-171 606.3 590 59.8
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 3.9e-171 605.9 654 54.7
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 6.6e-171 605.1 662 55.7
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 1.9e-170 603.6 601 58.1
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.3e-169 600.9 700 52.3
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 3.6e-169 599.4 653 53.4
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 6.2e-169 598.6 651 53.9
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 1.4e-168 597.4 652 53.2
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 2.4e-168 596.7 652 54.8
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 6.9e-168 595.1 628 55.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 6.9e-168 595.1 651 53.1
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 9.0e-168 594.7 682 52.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 9.9e-167 591.3 628 55.4
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 8.4e-166 588.2 660 53.6
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 3.2e-165 586.3 659 53.9
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 3.2e-165 586.3 614 55.5
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 1.6e-164 583.9 683 52.3
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 2.1e-164 583.6 659 53.4
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 2.5e-162 576.6 591 57.4
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 4.3e-162 575.9 683 53.0
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 3.4e-159 566.2 644 52.3
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 5.8e-159 565.5 427 71.4
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 3.8e-158 562.8 647 52.2
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 1.3e-153 547.7 591 55.5
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 3.3e-146 523.1 640 50.8
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.4e-144 516.9 610 49.5
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.1e-139 499.2 392 67.3
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 7.9e-132 475.3 655 47.5
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 1.4e-128 464.5 645 44.5
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 2.0e-127 460.7 508 53.9
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.6e-127 460.3 692 43.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 4.8e-121 439.5 293 76.1
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 5.3e-120 436.0 425 60.2
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 5.9e-119 432.6 419 60.4
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.2e-116 424.9 368 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.0e-114 417.5 603 43.8
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 4.8e-113 412.9 624 44.6
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-108 397.5 362 58.8
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.8e-107 394.4 623 40.6
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 6.8e-107 392.5 222 90.1
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 2.8e-105 387.1 650 39.2
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.5e-101 374.8 608 40.0
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.1e-92 344.4 355 51.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.3e-86 325.1 181 89.0
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.2e-81 307.8 168 89.9
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 3.4e-74 283.9 410 44.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.9e-74 282.3 250 59.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 3.2e-72 277.3 649 31.1
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-70 271.9 203 66.0
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.1e-68 264.6 338 46.7
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.1e-62 243.4 285 50.9
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 3.2e-56 224.2 424 33.5
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-55 222.2 205 59.0
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.6e-55 221.9 364 37.6
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-48 199.1 166 66.3
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.5e-47 194.1 203 61.1
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 6.0e-47 193.4 341 34.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 4.1e-35 154.1 299 36.8
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.1e-35 154.1 109 67.9
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 9.7e-29 132.9 85 72.9
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 3.7e-28 131.0 139 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-21 109.4 175 37.7
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.7e-20 105.5 262 32.4
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.4e-19 102.4 192 40.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.6e-18 98.2 226 35.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 2.7e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.0e-10 72.0 45 84.4
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.0e-09 69.7 67 55.2
Psat4g192040 Pisum sativum HOM05D001887 ORTHO05D330548 4.2e-08 64.3 146 36.3


User provided reference genes

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