Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30308 Trifolium pratense HOM05D001978 ORTHO05D003036 5.2e-57 224.2 113 100.0
TPR.G35927 Trifolium pratense HOM05D001978 ORTHO05D003036 1.9e-14 82.8 48 81.2
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 1.6e-13 79.7 46 80.4
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 1.6e-13 79.7 46 80.4
Psat6g024720 Pisum sativum HOM05D001978 ORTHO05D003036 6.0e-13 77.8 46 80.4
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 6.0e-13 77.8 46 80.4
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 1.0e-12 77.0 63 61.9
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 1.0e-12 77.0 54 68.5
TPR.G5183 Trifolium pratense HOM05D001978 ORTHO05D003036 2.3e-12 75.9 46 78.3
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 5.0e-12 74.7 63 61.9
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 5.0e-12 74.7 46 73.9
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 5.0e-12 74.7 46 73.9
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 5.0e-12 74.7 46 73.9
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 5.0e-12 74.7 46 73.9
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 6.6e-12 74.3 46 76.1
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 6.6e-12 74.3 67 59.7
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 8.6e-12 73.9 54 66.7
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 8.6e-12 73.9 54 66.7
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 8.6e-12 73.9 46 76.1
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 8.6e-12 73.9 55 65.5
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-11 73.6 46 73.9
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-11 73.6 46 73.9
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-11 73.6 46 69.6
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.1e-11 73.6 46 69.6
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 1.1e-11 73.6 54 61.1
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 1.5e-11 73.2 63 60.3
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.5e-11 73.2 46 73.9
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 1.9e-11 72.8 46 76.1
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 1.9e-11 72.8 46 76.1
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 1.9e-11 72.8 46 71.7
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 1.9e-11 72.8 46 71.7
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 2.5e-11 72.4 55 60.0
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 2.5e-11 72.4 46 76.1
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 3.3e-11 72.0 46 73.9
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 4.3e-11 71.6 46 73.9
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 4.3e-11 71.6 46 73.9
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 4.3e-11 71.6 46 71.7
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 5.6e-11 71.2 45 68.9
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 5.6e-11 71.2 46 73.9
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 5.6e-11 71.2 67 53.7
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 7.3e-11 70.9 67 52.2
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 7.3e-11 70.9 46 73.9
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 7.3e-11 70.9 46 73.9
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 7.3e-11 70.9 54 64.8
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 7.3e-11 70.9 46 71.7
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 7.3e-11 70.9 46 73.9
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 7.3e-11 70.9 46 73.9
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 7.3e-11 70.9 61 59.0
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 9.5e-11 70.5 72 54.2
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 9.5e-11 70.5 46 69.6
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.2e-10 70.1 46 71.7
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 1.2e-10 70.1 54 63.0
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 1.6e-10 69.7 54 59.3
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 1.6e-10 69.7 54 59.3
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 1.6e-10 69.7 46 71.7
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 2.1e-10 69.3 46 71.7
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 2.8e-10 68.9 46 71.7
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 2.8e-10 68.9 46 69.6
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 2.8e-10 68.9 46 69.6
Lj9A642G52 Lonicera japonica HOM05D001978 ORTHO05D003036 2.8e-10 68.9 46 69.6
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 2.8e-10 68.9 46 71.7
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 3.6e-10 68.6 46 69.6
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 3.6e-10 68.6 46 71.7
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 4.7e-10 68.2 55 58.2
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 4.7e-10 68.2 46 71.7
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 4.7e-10 68.2 46 69.6
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 6.2e-10 67.8 40 80.0
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 8.1e-10 67.4 46 69.6
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 8.1e-10 67.4 46 65.2
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 8.1e-10 67.4 46 69.6
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 8.1e-10 67.4 46 71.7
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 1.1e-09 67.0 46 67.4
ATR0057G059 Amborella trichopoda HOM05D001978 ORTHO05D003036 1.1e-09 67.0 67 49.3
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 64.8
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 1.1e-09 67.0 46 67.4
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 55.6
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 55.6
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 55.6
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 55.6
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.1e-09 67.0 67 46.3
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 1.1e-09 67.0 54 55.6
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.1e-09 67.0 46 71.7
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 1.4e-09 66.6 54 57.4
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 1.4e-09 66.6 46 71.7
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.4e-09 66.6 67 50.7
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 1.4e-09 66.6 54 57.4
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 1.4e-09 66.6 54 57.4
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 1.8e-09 66.2 46 69.6
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 1.8e-09 66.2 46 65.2
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 1.8e-09 66.2 38 78.9
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 2.3e-09 65.9 64 53.1
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 2.3e-09 65.9 45 66.7
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 2.3e-09 65.9 45 66.7
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.3e-09 65.9 70 47.1
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 2.3e-09 65.9 67 50.7
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.3e-09 65.9 46 65.2
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.3e-09 65.9 46 65.2
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 2.3e-09 65.9 46 67.4
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 2.3e-09 65.9 46 67.4
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 2.3e-09 65.9 45 66.7
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 2.3e-09 65.9 67 52.2
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 2.3e-09 65.9 67 50.7
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 3.1e-09 65.5 46 65.2
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 3.1e-09 65.5 67 44.8
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.1e-09 65.5 46 69.6
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 3.1e-09 65.5 46 65.2
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 3.1e-09 65.5 67 50.7
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 4.0e-09 65.1 46 65.2
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 4.0e-09 65.1 46 67.4
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.0e-09 65.1 49 61.2
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 5.2e-09 64.7 47 66.0
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 5.2e-09 64.7 64 51.6
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 5.2e-09 64.7 64 51.6
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 5.2e-09 64.7 45 64.4
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 5.2e-09 64.7 67 50.7
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 5.2e-09 64.7 60 56.7
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 6.8e-09 64.3 46 63.0
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 6.8e-09 64.3 46 67.4
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 8.9e-09 63.9 40 70.0
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 8.9e-09 63.9 40 70.0
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 8.9e-09 63.9 45 64.4
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 8.9e-09 63.9 40 70.0
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 8.9e-09 63.9 46 60.9
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 8.9e-09 63.9 40 77.5
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 8.9e-09 63.9 40 77.5
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 1.2e-08 63.5 45 62.2
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 1.2e-08 63.5 45 62.2
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 1.2e-08 63.5 45 62.2
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 1.2e-08 63.5 45 62.2
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 1.2e-08 63.5 45 62.2
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 1.2e-08 63.5 46 71.7
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 1.2e-08 63.5 67 50.7
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 1.5e-08 63.2 46 63.0
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 2.0e-08 62.8 54 59.3
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 3.4e-08 62.0 46 60.9
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 4.4e-08 61.6 46 63.0
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 4.4e-08 61.6 36 72.2
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 4.4e-08 61.6 38 76.3
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 5.8e-08 61.2 52 59.6
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 7.5e-08 60.8 46 63.0
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 7.5e-08 60.8 46 60.9
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 9.9e-08 60.5 46 63.0
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 9.9e-08 60.5 54 51.9
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 9.9e-08 60.5 46 60.9
vmacro10496 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 9.9e-08 60.5 46 65.2
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 1.3e-07 60.1 45 60.0
QL04p000034 Quercus lobata HOM05D001978 ORTHO05D003036 1.3e-07 60.1 53 60.4
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.7e-07 59.7 69 43.5
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 3.7e-07 58.5 45 60.0
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 8.3e-07 57.4 49 51.0
AUR62009427 Chenopodium quinoa HOM05D001978 ORTHO05D003036 8.3e-07 57.4 36 80.6
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 8.3e-07 57.4 53 50.9
TPR.G10129 Trifolium pratense HOM05D001978 ORTHO05D003036 1.1e-06 57.0 59 55.9
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.9e-06 56.2 40 62.5
FAN06G2010 Fragaria x ananassa HOM05D001978 ORTHO05D003036 5.4e-06 54.7 39 59.0
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 5.4e-06 54.7 40 62.5
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 5.4e-06 54.7 40 62.5
AagrBONN_evm.TU.Sc2ySwM_117.496 Anthoceros agrestis HOM05D001978 ORTHO05D003036 7.1e-06 54.3 47 57.4
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 7.1e-06 54.3 49 49.0
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 7.1e-06 54.3 49 49.0
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 7.1e-06 54.3 49 49.0
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 9.2e-06 53.9 49 46.9
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 9.2e-06 53.9 49 46.9


User provided reference genes

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