Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30307 Trifolium pratense HOM05D001978 ORTHO05D003036 5.6e-76 287.7 166 100.0
TPR.G8347 Trifolium pratense HOM05D001978 ORTHO05D003036 6.4e-48 194.5 165 78.2
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 7.8e-46 187.6 165 73.9
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 7.8e-46 187.6 165 73.9
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 7.8e-46 187.6 165 74.5
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 2.3e-45 186.0 165 60.0
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 8.7e-45 184.1 165 59.4
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 9.6e-44 180.6 165 71.5
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 9.6e-44 180.6 165 71.5
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 2.1e-43 179.5 165 70.9
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 4.0e-42 175.3 165 69.1
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 5.3e-42 174.9 165 68.5
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 5.3e-42 174.9 165 68.5
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 1.2e-41 173.7 165 72.1
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 2.0e-41 172.9 165 70.3
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 5.8e-41 171.4 163 66.3
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 5.8e-41 171.4 122 88.5
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 9.9e-41 170.6 165 65.5
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 9.9e-41 170.6 165 54.5
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 1.7e-40 169.9 165 66.7
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 1.7e-40 169.9 165 64.2
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 2.2e-40 169.5 151 58.9
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 3.8e-40 168.7 165 70.9
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 1.1e-39 167.2 165 67.9
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.9e-39 166.4 165 67.9
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 1.9e-39 166.4 165 66.7
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 1.9e-39 166.4 165 67.3
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 2.4e-39 166.0 165 53.3
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 4.2e-39 165.2 165 66.1
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.2e-39 165.2 165 67.3
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 5.4e-39 164.9 165 67.3
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 5.4e-39 164.9 165 55.8
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 7.1e-39 164.5 165 66.1
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 1.2e-38 163.7 165 52.1
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 2.7e-38 162.5 122 84.4
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 2.7e-38 162.5 122 84.4
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 3.5e-38 162.2 165 66.7
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.5e-38 162.2 165 64.8
Cpa.g.sc125.58 Carica papaya HOM05D001978 ORTHO05D003036 4.6e-38 161.8 165 67.9
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 4.6e-38 161.8 165 60.0
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 4.6e-38 161.8 165 65.5
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 4.6e-38 161.8 165 52.1
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 6.0e-38 161.4 165 64.2
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 7.9e-38 161.0 165 66.7
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 7.9e-38 161.0 122 83.6
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.3e-37 160.2 165 50.9
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.3e-37 160.2 165 50.9
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.3e-37 159.5 165 65.5
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.3e-37 159.5 165 65.5
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.3e-37 159.5 165 65.5
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 3.9e-37 158.7 165 65.5
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 3.9e-37 158.7 165 65.5
TAR633G1125 Trochodendron aralioides HOM05D001978 ORTHO05D003036 5.1e-37 158.3 165 64.2
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 6.7e-37 157.9 120 62.5
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 8.7e-37 157.5 165 65.5
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 1.1e-36 157.1 122 79.5
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 1.5e-36 156.8 120 80.0
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 2.5e-36 156.0 165 64.2
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 3.3e-36 155.6 165 63.0
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 4.3e-36 155.2 122 78.7
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 4.3e-36 155.2 165 64.8
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 4.3e-36 155.2 120 79.2
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 4.3e-36 155.2 122 80.3
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 4.3e-36 155.2 122 80.3
TAR636G2630 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.3e-36 155.2 163 50.3
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 5.6e-36 154.8 165 64.2
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 5.6e-36 154.8 122 60.7
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 5.6e-36 154.8 163 49.1
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 5.6e-36 154.8 163 49.1
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 7.4e-36 154.5 165 64.8
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 9.6e-36 154.1 120 61.7
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 9.6e-36 154.1 165 64.8
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.3e-35 153.7 165 49.1
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.3e-35 153.7 122 77.9
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.3e-35 153.7 165 65.5
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 1.6e-35 153.3 165 64.2
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 1.6e-35 153.3 122 60.7
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.8e-35 152.5 165 60.0
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.8e-35 152.5 122 59.8
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 3.7e-35 152.1 122 79.5
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 3.7e-35 152.1 122 79.5
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 3.7e-35 152.1 165 62.4
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 8.1e-35 151.0 122 57.4
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 1.1e-34 150.6 122 58.2
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.4e-34 150.2 120 80.0
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.4e-34 150.2 120 80.0
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.8e-34 149.8 165 64.2
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 2.4e-34 149.4 120 59.2
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.1e-34 149.1 173 49.7
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 3.1e-34 149.1 173 49.7
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 4.0e-34 148.7 122 77.9
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 4.0e-34 148.7 122 77.9
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 4.0e-34 148.7 165 46.7
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 4.0e-34 148.7 122 73.8
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 6.9e-34 147.9 165 62.4
vmacro21141 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 9.0e-34 147.5 122 57.4
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 1.5e-33 146.7 122 79.5
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 2.0e-33 146.4 119 58.8
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.0e-33 146.4 120 58.3
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 2.0e-33 146.4 122 78.7
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 2.6e-33 146.0 122 76.2
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 2.6e-33 146.0 122 76.2
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 5.8e-33 144.8 122 77.0
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 5.8e-33 144.8 122 57.4
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 7.6e-33 144.4 122 77.0
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 7.6e-33 144.4 122 77.0
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 7.6e-33 144.4 122 77.0
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 7.6e-33 144.4 122 55.7
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 7.6e-33 144.4 120 75.8
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 7.6e-33 144.4 165 61.8
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 7.6e-33 144.4 165 63.0
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.0e-32 144.1 137 54.0
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 1.7e-32 143.3 165 61.2
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.7e-32 143.3 119 58.0
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 2.2e-32 142.9 122 76.2
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 3.8e-32 142.1 122 76.2
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 3.8e-32 142.1 122 54.1
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 3.8e-32 142.1 165 62.4
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 4.9e-32 141.7 120 55.8
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 1.4e-31 140.2 122 74.6
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 2.5e-31 139.4 122 74.6
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 2.5e-31 139.4 122 74.6
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 2.5e-31 139.4 122 74.6
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 2.5e-31 139.4 122 74.6
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 2.5e-31 139.4 165 60.0
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 4.2e-31 138.7 122 74.6
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 4.2e-31 138.7 122 73.8
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 4.2e-31 138.7 122 73.8
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 5.5e-31 138.3 120 73.3
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 5.5e-31 138.3 120 54.2
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 5.5e-31 138.3 120 55.8
ATR0057G085 Amborella trichopoda HOM05D001978 ORTHO05D003036 9.3e-31 137.5 120 56.7
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 9.3e-31 137.5 122 75.4
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 7.9e-30 134.4 179 44.1
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.3e-29 133.7 119 55.5
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 6.7e-29 131.3 123 56.9
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 8.7e-29 131.0 123 56.1
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 8.7e-29 131.0 122 70.5
SalBow6G7160 Salvia bowleyana HOM05D001978 ORTHO05D003036 8.7e-29 131.0 122 70.5
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 1.5e-28 130.2 122 73.0
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 2.5e-28 129.4 123 54.5
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 3.3e-28 129.0 122 71.3
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 9.6e-28 127.5 123 52.8
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 2.8e-27 125.9 117 50.4
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 3.7e-27 125.6 122 70.5
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 3.7e-27 125.6 120 50.8
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 8.2e-27 124.4 117 50.4
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 8.2e-27 124.4 117 50.4
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 2.4e-26 122.9 164 49.4
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 5.3e-26 121.7 124 49.2
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 1.2e-25 120.6 124 51.6
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.2e-25 120.6 124 51.6
Cre12.g522450 Chlamydomonas reinhardtii HOM05D001978 ORTHO05D003036 2.6e-25 119.4 125 47.2
LjContig00016g0007772 Lotus japonicus HOM05D001978 ORTHO05D003036 1.7e-24 116.7 121 66.1
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 1.7e-24 116.7 121 66.1
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 6.5e-24 114.8 118 49.2
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 8.4e-24 114.4 165 44.2
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 1.9e-23 113.2 132 50.0
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 2.5e-23 112.8 118 48.3
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 4.6e-22 108.6 121 47.1
TPR.G11102 Trifolium pratense HOM05D001978 ORTHO05D003036 1.3e-21 107.1 115 53.0
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 1.1e-20 104.0 172 37.2
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 1.1e-20 104.0 172 37.2
AL1G31350 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.5e-20 102.8 123 55.3
TPR.G21296 Trifolium pratense HOM05D001978 ORTHO05D003036 3.3e-20 102.4 82 67.1
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 2.2e-19 99.8 129 56.6
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 8.2e-19 97.8 119 42.0
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 1.8e-18 96.7 123 43.1
COL.COLO4_23246 Corchorus olitorius HOM05D001978 ORTHO05D003036 2.4e-18 96.3 112 47.3
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 3.1e-18 95.9 122 44.3
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 3.1e-18 95.9 173 35.3
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 1.2e-17 94.0 130 40.8
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 3.4e-17 92.4 122 59.8
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 4.5e-17 92.0 165 52.7
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.7e-16 90.1 127 38.6
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 3.8e-16 89.0 118 40.7
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 5.0e-16 88.6 170 35.3
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.2e-15 85.9 99 47.5
AagrBONN_evm.TU.Sc2ySwM_117.496 Anthoceros agrestis HOM05D001978 ORTHO05D003036 3.6e-14 82.4 120 38.3
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 7.4e-12 74.7 44 79.5
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 1.3e-11 73.9 95 47.4
COL.COLO4_18389 Corchorus olitorius HOM05D001978 ORTHO05D003036 2.4e-10 69.7 105 42.9
AUR62009426 Chenopodium quinoa HOM05D001978 ORTHO05D003036 5.3e-10 68.6 41 70.7
AUR62009427 Chenopodium quinoa HOM05D001978 ORTHO05D003036 9.4e-07 57.8 88 40.9


User provided reference genes

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