Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 2205.3 1244 100.0
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1803.5 1315 81.4
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1786.2 1317 80.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1665.2 1325 75.7
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1543.5 1323 70.8
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1458.4 1325 68.2
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1458.4 1313 68.5
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1451.4 1330 69.4
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1444.1 1349 69.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1429.1 1319 67.0
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1381.7 1330 64.8
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1369.8 1356 64.1
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1368.6 1327 65.4
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1364.7 1356 63.8
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1169.8 984 69.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1160.2 1381 55.7
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1132.9 1372 55.4
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1125.9 1387 55.1
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1108.6 1302 56.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1108.6 1379 54.7
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1090.9 1377 54.3
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1077.8 1366 55.9
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 8.5e-312 1073.5 1371 53.0
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 7.1e-309 1064.3 1374 53.5
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 2.1e-308 1062.8 1417 52.4
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.1e-305 1050.8 1350 50.7
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 5.3e-304 1048.1 1367 52.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 3.4e-303 1045.4 1341 53.1
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 6.0e-300 1034.6 1352 52.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 7.9e-300 1034.2 1355 53.7
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.3e-299 1033.5 1379 53.0
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 2.3e-299 1032.7 1344 52.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.7e-299 1031.2 1358 51.8
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.4e-295 1018.8 1348 53.4
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.4e-295 1018.8 1349 53.4
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 4.2e-293 1011.9 1359 53.9
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 6.1e-292 1008.1 1372 52.0
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.7e-291 1004.6 1380 52.9
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 5.7e-290 1001.5 1371 51.9
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-289 1000.3 1382 52.2
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 9.0e-288 994.2 1301 53.3
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.5e-287 991.9 1366 51.6
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.7e-286 989.9 1356 52.2
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 9.4e-285 984.2 1350 51.9
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.2e-284 983.8 1401 51.7
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.7e-284 982.6 1412 51.3
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.4e-283 980.3 1352 51.8
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.8e-283 979.9 1359 51.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.5e-282 976.9 1447 50.0
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.8e-281 972.6 1380 50.9
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 4.8e-281 971.8 1359 52.8
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 4.1e-280 968.8 1357 50.9
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 8.8e-275 951.0 1371 50.5
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 7.4e-274 948.0 1359 50.9
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 3.7e-273 945.7 1350 50.7
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.2e-269 932.6 1348 50.6
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.2e-265 919.8 1380 49.5
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.8e-264 916.8 1332 50.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.9e-263 911.8 1354 49.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.3e-262 910.6 1324 49.8
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.2e-260 904.0 1493 46.0
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 6.1e-252 875.2 1182 54.1
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.8e-251 873.6 1397 48.5
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 3.4e-250 869.4 1350 46.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.8e-249 866.3 1211 49.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.9e-246 856.3 1349 46.6
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 5.7e-242 842.0 1367 47.0
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.8e-240 837.0 1349 44.8
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 2.7e-239 833.2 1409 45.0
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 3.0e-238 829.7 1361 46.3
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.3e-237 825.1 1124 47.7
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.0e-235 821.2 1378 45.1
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 3.1e-235 819.7 1408 49.4
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 4.4e-234 815.8 1391 44.7
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 4.6e-231 805.8 1369 44.7
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 9.5e-229 798.1 1035 49.2
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.2e-228 797.7 1206 46.2
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 3.6e-228 796.2 1399 44.2
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 4.7e-228 795.8 1206 49.3
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 7.5e-226 788.5 1321 44.3
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 9.8e-226 788.1 1396 43.8
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 9.2e-224 781.6 1337 45.7
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 7.8e-223 778.5 1395 42.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.6e-221 772.3 1209 45.2
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 5.2e-219 765.8 1156 47.0
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 8.9e-219 765.0 1356 44.0
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.4e-218 763.1 1354 43.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.4e-218 763.1 1354 43.7
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 3.2e-216 756.5 1358 43.8
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 3.2e-216 756.5 1366 43.6
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 5.4e-216 755.7 1394 44.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 5.6e-213 745.7 1373 40.7
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 6.2e-212 742.3 1281 43.3
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.5e-210 737.6 1300 44.5
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.4e-210 736.5 898 50.6
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.4e-208 731.1 1363 44.2
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.6e-207 727.6 1396 40.8
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.7e-207 726.9 1347 42.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.3e-206 723.8 1136 43.6
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.1e-204 717.2 1481 40.9
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 8.1e-204 715.3 1345 45.5
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 7.6e-202 708.8 778 54.5
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.3e-201 708.0 1467 41.2
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.5e-197 694.5 1365 43.7
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.8e-193 679.9 1323 43.8
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 4.2e-192 676.4 1331 45.9
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.5e-186 657.9 1066 46.9
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.9e-182 643.3 1253 41.3
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 5.1e-182 642.9 1129 43.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 5.7e-181 639.4 1331 42.1
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.1e-180 637.5 408 83.1
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 7.6e-178 629.0 1346 41.9
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 6.5e-177 625.9 1323 38.5
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.5e-173 614.0 990 50.0
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.5e-168 597.4 879 45.4
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.2e-164 584.3 511 68.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 2.5e-152 544.3 531 58.4
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.8e-150 538.1 1127 39.5
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.8e-150 538.1 1347 38.2
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.1e-147 525.8 802 45.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 4.1e-139 500.4 329 81.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 5.5e-136 490.0 1161 35.8
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.7e-132 478.4 1192 36.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 5.9e-122 443.4 1227 36.6
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 7.3e-120 436.4 1229 35.4
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.0e-117 428.3 1258 34.9
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.0e-114 418.3 1349 33.4
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 7.8e-114 416.4 885 44.9
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 6.4e-100 370.2 1363 30.5
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.4e-93 347.8 1363 32.2
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.7e-90 338.2 310 57.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.5e-80 305.1 1399 29.5
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 1.5e-72 279.3 200 74.5
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 5.1e-65 254.2 1164 29.9
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 9.7e-64 250.0 1278 30.3
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.1e-58 232.3 1143 28.5
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 5.7e-56 224.2 437 42.8
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.7e-55 221.5 307 44.0
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.4e-54 219.5 939 27.9
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 2.4e-54 218.8 934 28.4
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 5.3e-54 217.6 332 40.1
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 5.3e-54 217.6 195 59.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.0e-52 213.4 937 26.9
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.2e-51 207.2 207 55.6
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.0e-49 203.4 395 37.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 2.0e-48 199.1 925 25.5
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.0e-44 186.8 1088 27.2
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 3.8e-44 184.9 445 32.1
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 6.1e-42 177.6 576 43.6
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 7.9e-42 177.2 190 51.1
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 3.0e-41 175.3 1006 26.9
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.8e-39 168.7 245 42.0
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 4.8e-39 167.9 252 44.0
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 8.2e-39 167.2 380 38.4
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 6.5e-36 157.5 600 27.8
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 4.8e-31 141.4 201 62.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.7e-29 135.6 692 27.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 6.1e-26 124.4 187 38.0
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 4.0e-25 121.7 990 25.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.8e-25 120.9 796 25.1
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 2.0e-24 119.4 735 25.9
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.8e-23 115.5 1054 26.1
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.8e-23 115.5 1189 24.7
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 4.8e-23 114.8 189 34.4
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 4.5e-21 108.2 81 60.5
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 6.5e-20 104.4 90 62.2
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.0e-17 97.1 88 53.4
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 4.0e-17 95.1 124 50.0
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.2e-16 93.6 136 42.6
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 2.0e-13 82.8 212 39.6
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 7.8e-13 80.9 259 31.3
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 2.3e-12 79.3 52 73.1
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 7.3e-11 74.3 85 44.7
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 4.0e-09 68.6 60 58.3
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 5.2e-09 68.2 260 31.9
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-08 66.6 244 36.5
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.4e-06 60.1 132 31.8
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 7.0e-06 57.8 37 70.3
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 9.2e-06 57.4 135 32.6


User provided reference genes

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