Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28504 Trifolium pratense HOM05D006373 ORTHO05D008145 1.5e-25 118.6 57 100.0
TPR.G37746 Trifolium pratense HOM05D006373 ORTHO05D008145 4.2e-23 110.5 57 93.0
Medtr7g076290 Medicago truncatula HOM05D006373 ORTHO05D008145 3.9e-21 104.0 57 89.5
Psat3g112440 Pisum sativum HOM05D006373 ORTHO05D008145 6.3e-19 96.7 57 82.5
Lalb_Chr01g0021121 Lupinus albus HOM05D006373 ORTHO05D008145 1.1e-18 95.9 57 82.5
Phvul.008G070200 Phaseolus vulgaris HOM05D006373 ORTHO05D008145 1.1e-18 95.9 57 82.5
Ca_07867_v3 Cicer arietinum L. HOM05D006373 ORTHO05D008145 1.8e-18 95.1 57 80.7
TPR.G33174 Trifolium pratense HOM05D006373 ORTHO05D008145 1.8e-18 95.1 47 95.7
Glyma.09G264000 Glycine max HOM05D006373 ORTHO05D008145 3.1e-18 94.4 57 80.7
Lj1g0016698 Lotus japonicus HOM05D006373 ORTHO05D008145 3.1e-18 94.4 57 78.9
VMungo1383G2252 Vigna mungo HOM05D006373 ORTHO05D008145 3.1e-18 94.4 57 80.7
Atru.chr5.401 Acer truncatum HOM05D006373 ORTHO05D008145 2.0e-17 91.7 57 77.2
arahy.Tifrunner.gnm1.ann1.TZ2CHG Arachis hypogaea HOM05D006373 ORTHO05D008145 2.0e-17 91.7 57 78.9
arahy.Tifrunner.gnm1.ann1.V9KE7M Arachis hypogaea HOM05D006373 ORTHO05D008145 2.0e-17 91.7 57 78.9
THA.LOC104801460 Tarenaya hassleriana HOM05D006373 ORTHO05D008145 2.6e-17 91.3 57 73.7
CARHR000470 Cardamine hirsuta HOM05D006373 ORTHO05D008145 3.4e-17 90.9 57 75.4
Sp1g00420 Schrenkiella parvula HOM05D006373 ORTHO05D008145 4.5e-17 90.5 57 75.4
TPR.G18331 Trifolium pratense HOM05D006373 ORTHO05D008145 4.5e-17 90.5 57 84.2
Cc02_g37210 Coffea canephora HOM05D006373 ORTHO05D008145 5.9e-17 90.1 57 77.2
Cfa004178 Carpinus fangiana HOM05D006373 ORTHO05D008145 7.6e-17 89.7 57 75.4
Thhalv10007143m.g Eutrema salsugineum HOM05D006373 ORTHO05D008145 7.6e-17 89.7 57 73.7
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 1.0e-16 89.4 57 73.7
MD07G1125800 Malus domestica HOM05D006373 ORTHO05D008145 1.0e-16 89.4 57 75.4
Carub.0001s0035 Capsella rubella HOM05D006373 ORTHO05D008145 1.3e-16 89.0 57 75.4
Haze_15231 Corylus avellana HOM05D006373 ORTHO05D008145 1.3e-16 89.0 57 75.4
Glyma.18G228000 Glycine max HOM05D006373 ORTHO05D008145 1.3e-16 89.0 57 75.4
TAR375G0714 Trochodendron aralioides HOM05D006373 ORTHO05D008145 1.3e-16 89.0 57 73.7
CSS0009190 Camellia sinensis var. sinensis HOM05D006373 ORTHO05D008145 1.7e-16 88.6 57 75.4
CANSAT56G4468 Cannabis sativa HOM05D006373 ORTHO05D008145 3.8e-16 87.4 57 73.7
Migut.B01684 Erythranthe guttata HOM05D006373 ORTHO05D008145 5.0e-16 87.0 57 71.9
Gohir.D08G150600 Gossypium hirsutum HOM05D006373 ORTHO05D008145 5.0e-16 87.0 57 73.7
Gorai.004G156300 Gossypium raimondii HOM05D006373 ORTHO05D008145 5.0e-16 87.0 57 73.7
PSO478G1066 Papaver somniferum HOM05D006373 ORTHO05D008145 5.0e-16 87.0 57 73.7
BraA09t42266Z Brassica rapa HOM05D006373 ORTHO05D008145 6.5e-16 86.7 56 75.0
Lj7A521G13 Lonicera japonica HOM05D006373 ORTHO05D008145 6.5e-16 86.7 57 71.9
Prupe.2G154000 Prunus persica HOM05D006373 ORTHO05D008145 6.5e-16 86.7 57 73.7
CiPaw.02G024800 Carya illinoinensis HOM05D006373 ORTHO05D008145 8.5e-16 86.3 57 71.9
CsaV3_6G005860 Cucumis sativus L. HOM05D006373 ORTHO05D008145 1.1e-15 85.9 57 71.9
Nitab4.5_0004550g0010 Nicotiana tabacum HOM05D006373 ORTHO05D008145 1.1e-15 85.9 57 73.7
GSVIVG01027599001 Vitis vinifera HOM05D006373 ORTHO05D008145 1.1e-15 85.9 57 73.7
AT1G01880 Arabidopsis thaliana HOM05D006373 ORTHO05D008145 1.4e-15 85.5 57 71.9
Ciclev10019320m.g Citrus clementina HOM05D006373 ORTHO05D008145 1.4e-15 85.5 57 70.2
Dinv32419 Davidia involucrata HOM05D006373 ORTHO05D008145 1.4e-15 85.5 57 73.7
Gohir.A08G129300 Gossypium hirsutum HOM05D006373 ORTHO05D008145 1.4e-15 85.5 57 71.9
Sed0002578 Sechium edule HOM05D006373 ORTHO05D008145 1.4e-15 85.5 57 71.9
MSTRG.20789 Avicennia marina HOM05D006373 ORTHO05D008145 1.9e-15 85.1 57 70.2
DCAR_025171 Daucus carota HOM05D006373 ORTHO05D008145 1.9e-15 85.1 57 73.7
Thecc.01G369000 Theobroma cacao HOM05D006373 ORTHO05D008145 1.9e-15 85.1 57 71.9
EL10Ac1g00966 Beta vulgaris HOM05D006373 ORTHO05D008145 2.5e-15 84.7 56 75.0
FAN06G4951 Fragaria x ananassa HOM05D006373 ORTHO05D008145 2.5e-15 84.7 57 73.7
Peaxi162Scf00021g00529 Petunia axillaris HOM05D006373 ORTHO05D008145 2.5e-15 84.7 57 71.9
Sabra14G0055000 Salix brachista HOM05D006373 ORTHO05D008145 2.5e-15 84.7 57 71.9
Actinidia33446 Actinidia chinensis HOM05D006373 ORTHO05D008145 3.2e-15 84.3 57 70.2
HanXRQChr03g0093561 Helianthus annuus HOM05D006373 ORTHO05D008145 3.2e-15 84.3 57 71.9
RcHm_v2.0_Chr1g0352131 Rosa chinensis HOM05D006373 ORTHO05D008145 3.2e-15 84.3 57 75.4
FvH4_7g12990 Fragaria vesca HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 73.7
FAN01G2011 Fragaria x ananassa HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 73.7
FAN03G2318 Fragaria x ananassa HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 73.7
FAN06G0518 Fragaria x ananassa HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 73.7
FAN10G3773 Fragaria x ananassa HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 73.7
QL08p050698 Quercus lobata HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 70.2
TWI59G0120 Tripterygium wilfordii HOM05D006373 ORTHO05D008145 4.2e-15 84.0 57 71.9
Aqoxy7G00462 Aquilegia oxysepala HOM05D006373 ORTHO05D008145 5.5e-15 83.6 57 71.9
CAN.G170.53 Capsicum annuum HOM05D006373 ORTHO05D008145 5.5e-15 83.6 56 73.2
Eucgr.E00282 Eucalyptus grandis HOM05D006373 ORTHO05D008145 5.5e-15 83.6 57 70.2
FAN10G2811 Fragaria x ananassa HOM05D006373 ORTHO05D008145 5.5e-15 83.6 57 73.7
PGR042G0347 Punica granatum HOM05D006373 ORTHO05D008145 5.5e-15 83.6 57 71.9
Sc23g0003310 Simmondsia chinensis HOM05D006373 ORTHO05D008145 5.5e-15 83.6 57 73.7
PGSC0003DMG400017049 Solanum tuberosum HOM05D006373 ORTHO05D008145 5.5e-15 83.6 56 73.2
SHI25520 Sapria himalayana HOM05D006373 ORTHO05D008145 7.2e-15 83.2 57 70.2
C08p53900 Brassica napus HOM05D006373 ORTHO05D008145 9.3e-15 82.8 56 73.2
BolC8t52903H Brassica oleracea HOM05D006373 ORTHO05D008145 9.3e-15 82.8 56 73.2
SalBow3G0067 Salvia bowleyana HOM05D006373 ORTHO05D008145 9.3e-15 82.8 57 68.4
MBI12_g11810_MAGBIO Magnolia biondii HOM05D006373 ORTHO05D008145 1.2e-14 82.4 57 68.4
PSO782G5614 Papaver somniferum HOM05D006373 ORTHO05D008145 1.2e-14 82.4 58 72.4
Hund27327 Selenicereus undatus HOM05D006373 ORTHO05D008145 1.2e-14 82.4 57 70.2
Sopen01g037590 Solanum pennellii HOM05D006373 ORTHO05D008145 1.2e-14 82.4 56 71.4
COL.COLO4_06964 Corchorus olitorius HOM05D006373 ORTHO05D008145 1.6e-14 82.0 57 68.4
Duzib133G1433 Durio zibethinus HOM05D006373 ORTHO05D008145 1.6e-14 82.0 57 70.2
Hma1.2p1_0068F.1_g037130 Hydrangea macrophylla HOM05D006373 ORTHO05D008145 2.1e-14 81.6 57 70.2
Lsat_1_v5_gn_3_135660 Lactuca sativa HOM05D006373 ORTHO05D008145 2.1e-14 81.6 57 70.2
Manes.01G262700 Manihot esculenta HOM05D006373 ORTHO05D008145 2.1e-14 81.6 57 70.2
Rhsim01G0155400 Rhododendron simsii HOM05D006373 ORTHO05D008145 2.1e-14 81.6 57 66.7
vmacro20974 Vaccinium macrocarpon HOM05D006373 ORTHO05D008145 2.1e-14 81.6 57 68.4
Nn6g34269 Nelumbo nucifera HOM05D006373 ORTHO05D008145 2.7e-14 81.3 57 68.4
Potri.014G077300 Populus trichocarpa HOM05D006373 ORTHO05D008145 4.6e-14 80.5 57 70.2
Zm00001eb318880 Zea mays HOM05D006373 ORTHO05D008145 6.1e-14 80.1 57 68.4
ECA240G2884 Erigeron canadensis HOM05D006373 ORTHO05D008145 7.9e-14 79.7 57 68.4
Solyc01g091820.3 Solanum lycopersicum HOM05D006373 ORTHO05D008145 1.0e-13 79.3 56 69.6
Oeu059230.1 Olea europaea HOM05D006373 ORTHO05D008145 1.4e-13 79.0 56 73.2
HPP92_004956 Vanilla planifolia HOM05D006373 ORTHO05D008145 1.4e-13 79.0 57 68.4
Os09g0521900 Oryza sativa ssp. japonica HOM05D006373 ORTHO05D008145 2.3e-13 78.2 57 68.4
Ah.05g176000 Amaranthus hybridus HOM05D006373 ORTHO05D008145 6.7e-13 76.6 56 69.6
CDE04G1904 Ceratophyllum demersum HOM05D006373 ORTHO05D008145 8.8e-13 76.3 57 63.2
ATR0757G016 Amborella trichopoda HOM05D006373 ORTHO05D008145 1.9e-12 75.1 57 64.9
SGA_v2.0_scaffold153G37065 Striga asiatica HOM05D006373 ORTHO05D008145 1.9e-12 75.1 47 76.6
Zm00001eb103090 Zea mays HOM05D006373 ORTHO05D008145 1.9e-12 75.1 57 63.2
AUR62033368 Chenopodium quinoa HOM05D006373 ORTHO05D008145 1.7e-11 72.0 56 62.5
MELO3C022527.2 Cucumis melo HOM05D006373 ORTHO05D008145 1.1e-10 69.3 47 70.2
ClCG06G000110 Citrullus lanatus HOM05D006373 ORTHO05D008145 1.8e-10 68.6 47 70.2
CBR_g8991 Chara braunii HOM05D006373 ORTHO05D008145 3.4e-09 64.3 57 56.1
Rhsim01G0156500 Rhododendron simsii HOM05D000096 ORTHO05D000045 4.5e-09 63.9 44 68.2
SMO351G0379 Selaginella moellendorffii HOM05D006373 ORTHO05D008145 7.7e-09 63.2 57 52.6
Pp3c12_11380 Physcomitrium patens HOM05D006373 ORTHO05D008145 1.0e-08 62.8 57 54.4
Mapoly0022s0105 Marchantia polymorpha HOM05D006373 ORTHO05D008145 1.3e-08 62.4 56 53.6
Potri.002G152801 Populus trichocarpa HOM05D006373 ORTHO05D008145 1.6e-06 55.5 35 77.1
TWI23G1131 Tripterygium wilfordii HOM05D000196 ORTHO05D000279 2.7e-06 54.7 51 51.0


User provided reference genes

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