Gene: Sopen01g037590

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g037590
  • Transcript Identifier Sopen01g037590.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 95627754-95633270 : negative

Gene Family Information

  • ID HOM05D006373
  • #Genes/#Species 125/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g037590.1

Descriptions

  • Description 5-3 exonuclease family protein | FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity | INVOLVED IN: DNA repair | LOCATED IN: cellular_component unknown | CONTAINS InterPro DOMAIN/s: XPG N-terminal , DNA repair protein (XPGC)/yeast Rad , 5-3 exonuclease, C-terminal subdomain , Helix-hairpin-helix motif, class 2 , XPG/RAD2 endonuclease | BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein ., Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a) - Oryza sativa (Rice)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
ISO
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis AT1G01880
GO:0009650
ISO
PLAZA Integrative OrthologyUV protection AT1G01880
GO:0009555
ISO
PLAZA Integrative Orthologypollen development Os09g0521900
GO:0006259
ISO
PLAZA Integrative OrthologyDNA metabolic process AT1G01880

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0017108
ISO
PLAZA Integrative Orthology5'-flap endonuclease activity AT1G01880
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os09g0521900
GO:0048256
ISO
PLAZA Integrative Orthologyflap endonuclease activity Os09g0521900
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding Os09g0521900
GO:0008821
ISO
PLAZA Integrative Orthologycrossover junction endodeoxyribonuclease activity AT1G01880
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding Os09g0521900

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os09g0521900

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006084 XPG/Rad2 endonuclease
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
IPR006085 XPG, N-terminal
IPR006086 XPG-I domain
IPR029060 PIN-like domain superfamily
Mapman id Description
13.3.5.5.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.Holliday junction resolvase (GEN1)