Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.1e-201 706.4 363 100.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-157 558.1 360 80.3
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-157 558.1 360 80.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.4e-151 540.0 363 77.7
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 3.6e-136 488.8 360 70.3
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 9.8e-134 480.7 363 68.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 8.3e-133 477.6 360 67.8
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.6e-128 463.4 361 68.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.1e-124 450.7 360 68.9
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 8.6e-122 441.0 377 61.0
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 3.1e-119 432.6 359 63.5
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.9e-100 370.2 373 54.7
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 9.6e-97 357.8 299 60.2
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.4e-95 353.2 300 59.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 3.1e-95 352.8 358 53.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 4.0e-95 352.4 356 53.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.4e-94 349.4 300 59.3
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.6e-94 348.2 294 59.9
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 9.9e-94 347.8 300 59.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.9e-93 346.3 308 58.8
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 3.5e-91 339.3 357 51.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.0e-91 338.6 293 56.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 7.9e-91 338.2 293 56.7
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.0e-90 337.8 354 50.6
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.0e-90 337.8 300 58.0
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 8.7e-90 334.7 357 51.5
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.5e-89 333.2 357 48.7
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 7.4e-89 331.6 310 54.5
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.3e-88 330.9 361 50.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.3e-88 330.9 290 55.9
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.6e-88 330.5 311 55.0
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 8.1e-88 328.2 311 54.7
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.4e-87 327.4 367 49.3
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 4.0e-87 325.9 312 54.2
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 4.0e-87 325.9 294 55.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 6.9e-87 325.1 281 55.9
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 9.0e-87 324.7 357 49.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 9.0e-87 324.7 253 60.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 9.0e-87 324.7 298 55.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.4e-86 322.8 323 52.3
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.8e-86 322.0 294 56.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 7.6e-86 321.6 311 53.7
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 7.6e-86 321.6 311 53.7
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 7.6e-86 321.6 295 55.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.7e-85 320.5 357 49.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.2e-85 320.1 311 53.1
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 3.8e-85 319.3 275 56.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 3.8e-85 319.3 275 56.0
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 6.4e-85 318.5 266 57.9
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.1e-84 317.8 284 57.0
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-84 317.4 280 57.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.4e-84 317.4 356 48.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.9e-84 317.0 357 49.3
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.2e-84 316.2 362 47.2
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 7.1e-84 315.1 280 57.9
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 7.1e-84 315.1 323 51.7
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 7.1e-84 315.1 278 55.4
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 7.1e-84 315.1 366 47.5
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 9.3e-84 314.7 302 55.3
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 9.3e-84 314.7 293 52.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.1e-83 313.5 270 57.8
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.1e-83 313.5 285 56.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 4.6e-83 312.4 286 56.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 4.6e-83 312.4 303 52.8
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 6.0e-83 312.0 312 51.0
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 6.0e-83 312.0 265 58.5
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.0e-83 312.0 315 51.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 6.0e-83 312.0 301 51.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.0e-82 311.2 313 54.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.0e-82 311.2 313 54.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.0e-82 311.2 308 52.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.8e-82 310.5 276 55.4
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.8e-82 310.5 267 57.7
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.8e-82 310.5 325 48.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 2.3e-82 310.1 312 51.9
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.3e-82 310.1 315 51.4
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 5.1e-82 308.9 326 51.2
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-81 307.8 314 53.2
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.1e-81 307.8 308 51.9
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-81 307.4 314 53.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.5e-81 307.4 305 52.1
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.9e-81 307.0 294 54.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-81 307.0 338 48.2
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.5e-81 306.6 294 52.7
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 3.3e-81 306.2 312 51.6
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 7.4e-81 305.1 265 58.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 9.6e-81 304.7 235 62.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.3e-80 304.3 356 46.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 3.1e-79 299.7 305 51.5
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 4.0e-79 299.3 314 51.3
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 5.3e-79 298.9 256 57.4
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 9.0e-79 298.1 358 47.8
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 4.5e-78 295.8 382 44.0
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 4.5e-78 295.8 309 49.8
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.8e-78 295.4 278 55.0
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.8e-78 295.4 358 47.5
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.7e-77 293.9 336 47.9
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.8e-77 292.7 356 44.4
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.1e-76 291.2 320 48.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.2e-75 287.7 358 47.5
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 5.1e-74 282.3 239 59.0
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.9e-73 280.4 247 57.5
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 3.7e-72 276.2 211 63.5
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.8e-72 275.8 356 45.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.0e-70 270.4 377 41.4
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.0e-69 265.8 215 62.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.0e-66 256.5 165 77.0
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-65 254.6 349 42.1
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 2.5e-65 253.4 214 58.4
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.4e-63 246.9 350 41.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 6.5e-53 212.2 271 42.1
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.9e-52 210.7 259 46.3
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.5e-52 210.3 284 43.3
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 5.5e-52 209.1 243 49.4
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 5.5e-52 209.1 243 49.4
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 6.1e-51 205.7 215 49.3
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.6e-49 200.3 243 47.3
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 3.1e-47 193.4 239 43.9
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.6e-46 190.3 246 46.3
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 4.2e-44 183.0 210 48.6
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 5.5e-44 182.6 328 34.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.5e-41 174.5 291 36.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.4e-39 167.2 151 55.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.4e-39 167.2 295 32.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.1e-39 166.4 277 38.6
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.2e-36 156.8 190 45.8
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-33 148.3 217 42.4
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 5.7e-33 146.0 208 38.0
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.2e-32 144.1 131 54.2
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 3.1e-31 140.2 326 33.1
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.5e-30 136.7 106 62.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-29 133.3 418 28.5
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 8.6e-29 132.1 109 56.9
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.5e-28 131.3 209 39.2
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 3.5e-22 110.2 292 29.8
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 5.2e-18 96.3 200 30.5
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.3e-13 81.6 91 49.5
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.5e-09 68.2 78 39.7
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 4.4e-09 66.6 87 43.7
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 7.5e-09 65.9 204 24.5


User provided reference genes

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