Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27666 Trifolium pratense HOM05D000070 ORTHO05D006627 5.6e-150 534.3 270 100.0
TPR.G9706 Trifolium pratense HOM05D000070 ORTHO05D006627 5.4e-105 384.8 302 71.2
Medtr4g083460 Medicago truncatula HOM05D000070 ORTHO05D006627 1.2e-99 367.1 302 68.2
Psat7g132840 Pisum sativum HOM05D000070 ORTHO05D006627 1.1e-97 360.5 299 68.2
Ca_18785_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006627 9.0e-92 340.9 302 65.6
Glyma.07G224000 Glycine max HOM05D000070 ORTHO05D006627 1.1e-86 323.9 304 60.9
Lj4g0001942 Lotus japonicus HOM05D000070 ORTHO05D006627 5.3e-84 315.1 304 60.5
Lalb_Chr05g0219821 Lupinus albus HOM05D000070 ORTHO05D006627 2.2e-82 309.7 302 59.3
arahy.Tifrunner.gnm1.ann1.UR3YMK Arachis hypogaea HOM05D000070 ORTHO05D006627 9.7e-78 294.3 299 57.5
arahy.Tifrunner.gnm1.ann1.REAP7F Arachis hypogaea HOM05D000070 ORTHO05D006627 5.3e-76 288.5 299 56.5
Phvul.002G100600 Phaseolus vulgaris HOM05D000070 ORTHO05D006627 1.4e-73 280.4 301 53.2
TPR.G29131 Trifolium pratense HOM05D000070 ORTHO05D006627 1.9e-73 280.0 148 95.3
TPR.G20301 Trifolium pratense HOM05D000070 ORTHO05D006627 6.7e-63 245.0 270 57.4
TPR.G29502 Trifolium pratense HOM05D000070 ORTHO05D006627 1.0e-47 194.5 102 92.2
CiPaw.02G023600 Carya illinoinensis HOM05D000070 ORTHO05D006627 1.5e-41 174.1 307 36.8
Duzib192G0613 Durio zibethinus HOM05D000070 ORTHO05D006627 3.3e-41 172.9 309 38.5
Sabra01G0137800 Salix brachista HOM05D000070 ORTHO05D006627 7.2e-41 171.8 301 39.5
Ciclev10014090m.g Citrus clementina HOM05D000070 ORTHO05D006627 4.7e-40 169.1 308 39.3
Potri.001G174100 Populus trichocarpa HOM05D000070 ORTHO05D006627 1.8e-39 167.2 296 38.2
Thecc.06G135300 Theobroma cacao HOM05D000070 ORTHO05D006627 5.2e-39 165.6 304 36.8
Cfa006373 Carpinus fangiana HOM05D000070 ORTHO05D006627 6.8e-39 165.2 307 37.5
Prupe.4G112300 Prunus persica HOM05D000070 ORTHO05D006627 6.8e-39 165.2 308 36.4
Atru.chr10.621 Acer truncatum HOM05D000070 ORTHO05D006627 2.0e-38 163.7 305 37.0
CANSAT35G0895 Cannabis sativa HOM05D000070 ORTHO05D006627 2.0e-38 163.7 287 38.7
Manes.11G051180 Manihot esculenta HOM05D000070 ORTHO05D006627 7.5e-38 161.8 309 35.0
COL.COLO4_30925 Corchorus olitorius HOM05D000070 ORTHO05D006627 2.2e-37 160.2 302 35.4
Haze_04406 Corylus avellana HOM05D000070 ORTHO05D006627 3.7e-37 159.5 302 36.8
QL11p017850 Quercus lobata HOM05D000070 ORTHO05D006627 1.1e-36 157.9 297 37.0
Gorai.011G051500 Gossypium raimondii HOM05D000070 ORTHO05D006627 1.4e-36 157.5 298 36.6
TAR626G1726 Trochodendron aralioides HOM05D000070 ORTHO05D006627 1.4e-36 157.5 306 35.6
Gohir.D10G048401 Gossypium hirsutum HOM05D000070 ORTHO05D006627 2.4e-36 156.8 307 35.8
MD05G1251500 Malus domestica HOM05D000070 ORTHO05D006627 4.1e-36 156.0 311 35.4
FvH4_3g12310 Fragaria vesca HOM05D000070 ORTHO05D006627 2.0e-35 153.7 289 37.0
Cpa.g.sc138.31 Carica papaya HOM05D000070 ORTHO05D006627 1.0e-34 151.4 295 36.6
TWI09G1172 Tripterygium wilfordii HOM05D000070 ORTHO05D006627 2.3e-34 150.2 300 33.7
Dinv05864 Davidia involucrata HOM05D000070 ORTHO05D006627 3.9e-34 149.4 246 40.7
RcHm_v2.0_Chr5g0020121 Rosa chinensis HOM05D000070 ORTHO05D006627 3.9e-34 149.4 285 35.8
GSVIVG01013614001 Vitis vinifera HOM05D000070 ORTHO05D006627 3.9e-34 149.4 301 34.9
Actinidia01326 Actinidia chinensis HOM05D000070 ORTHO05D006627 2.5e-33 146.7 309 34.0
FAN21G2030 Fragaria x ananassa HOM05D000070 ORTHO05D006627 4.3e-33 146.0 298 34.9
Aa31LG3G18070 Aethionema arabicum HOM05D000065 ORTHO05D006627 1.8e-31 140.6 296 33.8
Nitab4.5_0003485g0060 Nicotiana tabacum HOM05D000070 ORTHO05D006627 8.9e-31 138.3 278 33.5
Rhsim01G0112400 Rhododendron simsii HOM05D000070 ORTHO05D006627 1.2e-30 137.9 306 34.3
Cc10_g13650 Coffea canephora HOM05D000070 ORTHO05D006627 5.8e-30 135.6 308 32.5
HanXRQChr02g0040551 Helianthus annuus HOM05D000070 ORTHO05D006627 7.5e-30 135.2 291 33.3
vmacro20772 Vaccinium macrocarpon HOM05D000070 ORTHO05D006627 9.8e-30 134.8 305 33.1
Nn7g37939 Nelumbo nucifera HOM05D000070 ORTHO05D006627 3.7e-29 132.9 304 32.2
PGR102G0872 Punica granatum HOM05D000070 ORTHO05D006627 3.7e-29 132.9 306 31.7
Nitab4.5_0000317g0130 Nicotiana tabacum HOM05D000070 ORTHO05D006627 6.4e-29 132.1 292 32.5
Aqoxy1G01537 Aquilegia oxysepala HOM05D000070 ORTHO05D006627 8.3e-29 131.7 290 34.5
AT5G08470 Arabidopsis thaliana HOM05D000070 ORTHO05D006627 4.1e-28 129.4 305 31.5
C09p68530 Brassica napus HOM05D000070 ORTHO05D006627 4.1e-28 129.4 306 32.4
MBI01_g11418_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006627 5.4e-28 129.0 289 33.9
PSO675G1403 Papaver somniferum HOM05D000070 ORTHO05D006627 5.4e-28 129.0 285 35.1
Lsat_1_v5_gn_1_6720 Lactuca sativa HOM05D000070 ORTHO05D006627 9.2e-28 128.3 305 32.1
Peaxi162Scf00066g00526 Petunia axillaris HOM05D000070 ORTHO05D006627 2.0e-27 127.1 280 32.5
BraA10t44876Z Brassica rapa HOM05D000070 ORTHO05D006627 2.7e-27 126.7 306 31.7
BolC9t59597H Brassica oleracea HOM05D000070 ORTHO05D006627 3.5e-27 126.3 308 31.8
CsaV3_1G046740 Cucumis sativus L. HOM05D000070 ORTHO05D006627 3.5e-27 126.3 304 30.9
Hma1.2p1_1220F.1_g268000 Hydrangea macrophylla HOM05D000070 ORTHO05D006627 3.5e-27 126.3 190 41.1
ECA247G0604 Erigeron canadensis HOM05D000070 ORTHO05D006627 4.6e-27 125.9 294 31.0
Thhalv10012497m.g Eutrema salsugineum HOM05D000070 ORTHO05D006627 6.0e-27 125.6 306 31.4
FAN26G0150 Fragaria x ananassa HOM05D000049 ORTHO05D006627 1.7e-26 124.0 262 34.0
Sp6g34430 Schrenkiella parvula HOM05D000070 ORTHO05D006627 1.7e-26 124.0 309 30.7
A10p28270 Brassica napus HOM05D000070 ORTHO05D006627 2.3e-26 123.6 305 31.1
ClCG01G008970 Citrullus lanatus HOM05D000070 ORTHO05D006627 5.0e-26 122.5 300 31.3
BcaB08g37256 Brassica carinata HOM05D000070 ORTHO05D006627 8.6e-26 121.7 289 31.1
PSO541G5972 Papaver somniferum HOM05D000070 ORTHO05D006627 8.6e-26 121.7 285 34.0
CARHR204530 Cardamine hirsuta HOM05D000070 ORTHO05D006627 1.1e-25 121.3 300 32.7
FAN16G1763 Fragaria x ananassa HOM05D000070 ORTHO05D006627 3.3e-25 119.8 249 36.1
Sed0014200 Sechium edule HOM05D000070 ORTHO05D006627 3.3e-25 119.8 301 29.9
Carub.0006s0739 Capsella rubella HOM05D000070 ORTHO05D006627 5.6e-25 119.0 313 31.6
CAN.G405.6 Capsicum annuum HOM05D000070 ORTHO05D006627 2.1e-24 117.1 284 30.6
Eucgr.E02009 Eucalyptus grandis HOM05D000070 ORTHO05D006627 4.7e-24 115.9 295 32.2
Sc07g0007670 Simmondsia chinensis HOM05D000070 ORTHO05D006627 1.8e-23 114.0 291 30.9
DCAR_014363 Daucus carota HOM05D000070 ORTHO05D006627 3.1e-23 113.2 304 31.2
Lj4A664T70 Lonicera japonica HOM05D000070 ORTHO05D006627 2.0e-22 110.5 187 35.8
Solyc04g057960.4 Solanum lycopersicum HOM05D000070 ORTHO05D006627 9.8e-22 108.2 284 28.9
Sopen04g025820 Solanum pennellii HOM05D000070 ORTHO05D006627 2.2e-21 107.1 302 29.1
SalBow7G2869 Salvia bowleyana HOM05D000070 ORTHO05D006627 2.9e-21 106.7 315 30.5
Migut.C01080 Erythranthe guttata HOM05D000070 ORTHO05D006627 8.3e-21 105.1 313 29.7
MELO3C021783.2 Cucumis melo HOM05D000070 ORTHO05D006627 1.9e-20 104.0 257 32.3
SHI32171 Sapria himalayana HOM05D000070 ORTHO05D006627 4.1e-20 102.8 318 26.7
Oeu040394.2 Olea europaea HOM05D000070 ORTHO05D006627 3.0e-18 96.7 252 30.6
SGA_v2.0_scaffold52G18907 Striga asiatica HOM05D000070 ORTHO05D006627 5.6e-17 92.4 314 28.3
EL10Ac2g02462 Beta vulgaris HOM05D000070 ORTHO05D006627 4.7e-16 89.4 289 27.7
Ah.15g098730 Amaranthus hybridus HOM05D000070 ORTHO05D006627 1.4e-15 87.8 286 29.0
AUR62024782 Chenopodium quinoa HOM05D000070 ORTHO05D006627 5.2e-15 85.9 304 26.0
ATR0763G153 Amborella trichopoda HOM05D000070 ORTHO05D006627 4.4e-14 82.8 281 28.1
CDE02G2199 Ceratophyllum demersum HOM05D000070 ORTHO05D006627 5.8e-14 82.4 258 31.0
AUR62032439 Chenopodium quinoa HOM05D000070 ORTHO05D006627 3.7e-13 79.7 304 25.3
Lj4A674T64 Lonicera japonica HOM05D000070 ORTHO05D006627 3.0e-10 70.1 161 37.3
Zm00001eb176300 Zea mays HOM05D000070 ORTHO05D006627 1.9e-09 67.4 279 23.7
Gohir.A07G143100 Gossypium hirsutum HOM05D005751 ORTHO05D007198 5.6e-09 65.9 74 44.6
SEGI_30204 Sequoiadendron giganteum HOM05D000070 ORTHO05D006627 6.8e-07 58.9 298 26.5


User provided reference genes

Program Settings