Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 6.6e-31 136.7 69 100.0
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 6.6e-31 136.7 69 100.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 3.8e-26 120.9 69 88.4
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 9.2e-25 116.3 68 85.3
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.3e-23 112.5 68 83.8
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.3e-23 112.5 68 83.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.9e-23 110.9 68 79.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.1e-22 109.4 68 79.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.5e-22 109.0 68 80.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.5e-22 109.0 68 80.9
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.9e-22 108.6 68 80.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.9e-22 108.6 68 80.9
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.3e-22 107.5 68 80.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.3e-22 107.5 68 76.5
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.6e-22 107.1 68 77.9
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 7.3e-22 106.7 68 79.4
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 7.3e-22 106.7 68 79.4
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 2.1e-21 105.1 68 79.4
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 6.2e-21 103.6 68 72.1
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.4e-20 102.4 68 70.6
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-20 102.4 68 77.9
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.4e-20 101.7 68 76.5
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.1e-20 101.3 68 70.6
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 4.0e-20 100.9 68 70.6
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 4.0e-20 100.9 68 76.5
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 4.0e-20 100.9 68 70.6
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 6.9e-20 100.1 68 72.1
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 6.9e-20 100.1 68 72.1
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.9e-20 100.1 68 75.0
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 8.9e-20 99.8 68 75.0
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 8.9e-20 99.8 68 72.1
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.2e-19 99.4 68 73.5
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.5e-19 99.0 68 73.5
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.5e-19 99.0 68 72.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.0e-19 98.6 68 70.6
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 2.6e-19 98.2 68 70.6
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 2.6e-19 98.2 69 69.6
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 3.4e-19 97.8 68 70.6
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 3.4e-19 97.8 67 73.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 4.4e-19 97.4 68 67.6
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 4.4e-19 97.4 68 73.5
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 4.4e-19 97.4 68 72.1
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 5.8e-19 97.1 68 72.1
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 5.8e-19 97.1 68 69.1
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.8e-19 97.1 68 69.1
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.9e-19 96.3 68 69.1
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-18 95.9 68 69.1
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-18 95.9 68 69.1
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-18 95.9 68 69.1
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.3e-18 95.9 67 73.1
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.3e-18 95.9 68 69.1
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.3e-18 95.9 68 67.6
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.7e-18 95.5 66 72.7
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.7e-18 95.5 68 67.6
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.7e-18 95.5 68 72.1
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.7e-18 95.5 68 67.6
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.7e-18 95.5 68 64.7
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.2e-18 95.1 68 69.1
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.2e-18 95.1 68 69.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.9e-18 94.7 68 66.2
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.9e-18 94.7 68 70.6
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 2.9e-18 94.7 68 67.6
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.8e-18 94.4 68 63.2
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.8e-18 94.4 68 69.1
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 3.8e-18 94.4 68 69.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.9e-18 94.0 68 64.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 4.9e-18 94.0 68 63.2
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 4.9e-18 94.0 68 66.2
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 4.9e-18 94.0 68 66.2
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 6.4e-18 93.6 68 69.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 8.4e-18 93.2 68 64.7
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 8.4e-18 93.2 76 67.1
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.4e-17 92.4 68 67.6
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.4e-17 92.4 68 66.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.9e-17 92.0 68 64.7
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.9e-17 92.0 68 67.6
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.9e-17 92.0 62 71.0
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.4e-17 91.7 69 68.1
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.2e-17 91.3 68 67.6
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 3.2e-17 91.3 68 67.6
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 4.2e-17 90.9 68 64.7
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 5.4e-17 90.5 70 62.9
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.4e-17 90.5 68 67.6
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.4e-17 90.5 68 64.7
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 5.4e-17 90.5 68 69.1
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 5.4e-17 90.5 68 66.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.4e-17 90.5 68 66.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.4e-17 90.5 68 66.2
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 9.3e-17 89.7 68 67.6
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.2e-16 89.4 68 64.7
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 2.1e-16 88.6 68 61.8
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.1e-16 88.6 68 63.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.1e-16 88.6 68 63.2
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.7e-16 88.2 68 63.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 6.0e-16 87.0 68 63.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 7.8e-16 86.7 67 64.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 7.8e-16 86.7 68 63.2
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.0e-15 86.3 67 68.7
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.3e-15 85.9 67 64.2
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-15 85.9 67 64.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-15 85.9 67 64.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.6e-15 83.6 69 60.9
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-14 82.4 67 62.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.5e-14 82.4 68 51.5
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.3e-13 79.3 58 70.7
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-13 79.3 67 61.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.3e-13 79.3 68 57.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.6e-13 79.0 68 52.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.1e-13 78.6 68 55.9
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 3.6e-13 77.8 68 57.4
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 6.2e-13 77.0 68 50.0
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.1e-13 76.6 68 63.2
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.4e-12 75.9 68 55.9
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 5.3e-12 73.9 68 52.9
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.2e-11 72.8 74 51.4
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 3.4e-11 71.2 68 54.4
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 3.4e-11 71.2 68 54.4
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 3.4e-11 71.2 68 54.4
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-10 69.3 62 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 2.9e-10 68.2 68 45.6
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 6.4e-10 67.0 68 50.0
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.4e-09 65.9 95 41.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 4.6e-08 60.8 66 47.0
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 4.6e-08 60.8 28 96.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 6.7e-07 57.0 65 41.5
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.1e-06 56.2 97 35.1
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.5e-06 55.1 42 66.7


User provided reference genes

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