Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26416 Trifolium pratense HOM05D001537 ORTHO05D002595 1.7e-296 1021.9 516 100.0
Psat6g000440 Pisum sativum HOM05D001537 ORTHO05D002595 4.5e-233 811.2 510 81.8
Medtr1g026490 Medicago truncatula HOM05D001537 ORTHO05D002595 5.7e-220 767.7 512 78.1
Lj5g0001846 Lotus japonicus HOM05D001537 ORTHO05D002595 6.2e-182 641.3 515 66.4
Glyma.14G223700 Glycine max HOM05D001537 ORTHO05D002595 1.4e-170 603.6 506 65.0
Ca_25241_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 9.0e-165 584.3 511 64.6
Lalb_Chr03g0033681 Lupinus albus HOM05D001537 ORTHO05D002595 1.4e-157 560.5 513 61.6
Phvul.001G000600 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 3.5e-153 545.8 512 59.2
VMungo0647G1246 Vigna mungo HOM05D001537 ORTHO05D002595 7.6e-148 528.1 515 57.3
arahy.Tifrunner.gnm1.ann1.UA1BSP Arachis hypogaea HOM05D001537 ORTHO05D002595 1.7e-147 526.9 542 55.0
Ca_14546_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 9.3e-146 521.2 506 58.7
arahy.Tifrunner.gnm1.ann1.74ZX0A Arachis hypogaea HOM05D001537 ORTHO05D002595 2.1e-137 493.4 506 55.1
QL02p014921 Quercus lobata HOM05D001537 ORTHO05D002595 6.5e-99 365.5 552 42.6
Dinv31961 Davidia involucrata HOM05D001537 ORTHO05D002595 1.5e-98 364.4 559 44.4
Haze_22823 Corylus avellana HOM05D001537 ORTHO05D002595 1.1e-93 348.2 565 41.4
CSS0018686 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 1.5e-90 337.8 535 43.7
Potri.002G008700 Populus trichocarpa HOM05D001537 ORTHO05D002595 3.0e-88 330.1 527 42.7
Actinidia17058 Actinidia chinensis HOM05D001537 ORTHO05D002595 6.3e-86 322.4 538 41.4
Prupe.5G009400 Prunus persica HOM05D001537 ORTHO05D002595 8.3e-86 322.0 529 41.0
Sabra02G0006500 Salix brachista HOM05D001537 ORTHO05D002595 5.4e-85 319.3 529 41.2
GSVIVG01013389001 Vitis vinifera HOM05D001537 ORTHO05D002595 5.9e-84 315.8 525 41.5
MD16G1283500 Malus domestica HOM05D001537 ORTHO05D002595 8.0e-81 305.4 531 40.9
Manes.18G003801 Manihot esculenta HOM05D001537 ORTHO05D002595 4.0e-80 303.1 532 38.7
Ciclev10000045m.g Citrus clementina HOM05D001537 ORTHO05D002595 1.3e-78 298.1 590 38.0
FAN08G0357 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.2e-76 291.6 533 38.3
FAN13G0321 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.6e-76 291.2 533 38.1
RcHm_v2.0_Chr7g0215861 Rosa chinensis HOM05D001537 ORTHO05D002595 1.0e-75 288.5 534 37.5
Atru.chr13.115 Acer truncatum HOM05D001537 ORTHO05D002595 3.3e-74 283.5 588 37.2
CANSAT25G3097 Cannabis sativa HOM05D001537 ORTHO05D002595 3.6e-73 280.0 534 38.8
Rhsim06G0005400 Rhododendron simsii HOM05D001537 ORTHO05D002595 8.9e-72 275.4 560 38.2
Thecc.08G061900 Theobroma cacao HOM05D001537 ORTHO05D002595 1.3e-70 271.6 523 36.9
Sed0022111 Sechium edule HOM05D001537 ORTHO05D002595 2.2e-70 270.8 534 37.1
Duzib093G0377 Durio zibethinus HOM05D001537 ORTHO05D002595 8.3e-70 268.9 532 37.2
THA.LOC104811474 Tarenaya hassleriana HOM05D001537 ORTHO05D002595 8.3e-70 268.9 565 36.5
CsaV3_4G037380 Cucumis sativus L. HOM05D001537 ORTHO05D002595 3.2e-69 266.9 539 37.1
FvH4_5g25570 Fragaria vesca HOM05D001537 ORTHO05D002595 2.7e-68 263.8 490 37.6
MELO3C017033.2 Cucumis melo HOM05D001537 ORTHO05D002595 6.0e-68 262.7 533 37.0
Sc15g0004240 Simmondsia chinensis HOM05D001537 ORTHO05D002595 6.0e-68 262.7 555 36.6
Lj4A808G42 Lonicera japonica HOM05D001537 ORTHO05D002595 1.7e-67 261.2 468 39.7
FAN18G0587 Fragaria x ananassa HOM05D001537 ORTHO05D002595 5.1e-67 259.6 533 36.0
TWI56G1355 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 5.1e-67 259.6 536 37.3
Nitab4.5_0004356g0020 Nicotiana tabacum HOM05D001537 ORTHO05D002595 6.6e-67 259.2 541 36.4
PGR031G0149 Punica granatum HOM05D001537 ORTHO05D002595 4.3e-66 256.5 514 36.2
MBI05_g14353_MAGBIO Magnolia biondii HOM05D001537 ORTHO05D002595 5.6e-66 256.1 538 34.9
Nitab4.5_0000486g0210 Nicotiana tabacum HOM05D001537 ORTHO05D002595 9.5e-66 255.4 490 37.1
ClCG11G018810 Citrullus lanatus HOM05D001537 ORTHO05D002595 3.1e-64 250.4 535 35.9
DCAR_022967 Daucus carota HOM05D001537 ORTHO05D002595 2.6e-63 247.3 521 36.7
Gohir.D05G181700 Gossypium hirsutum HOM05D001537 ORTHO05D002595 5.8e-63 246.1 519 34.1
Hma1.2p1_0612F.1_g188850 Hydrangea macrophylla HOM05D001537 ORTHO05D002595 7.5e-63 245.7 371 42.9
CARHR021170 Cardamine hirsuta HOM05D001537 ORTHO05D002595 1.3e-62 245.0 551 35.2
Gorai.009G186700 Gossypium raimondii HOM05D001537 ORTHO05D002595 2.9e-62 243.8 519 33.9
Nn6g31690 Nelumbo nucifera HOM05D001537 ORTHO05D002595 6.4e-62 242.7 522 33.5
Hund01784 Selenicereus undatus HOM05D001537 ORTHO05D002595 1.1e-61 241.9 534 35.2
Gohir.A05G178300 Gossypium hirsutum HOM05D001537 ORTHO05D002595 1.4e-61 241.5 519 33.3
AL1G33710 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 1.9e-61 241.1 546 36.6
Sopen10g030160 Solanum pennellii HOM05D001537 ORTHO05D002595 1.6e-60 238.0 558 33.9
AUR62035135 Chenopodium quinoa HOM05D001537 ORTHO05D002595 4.6e-60 236.5 554 35.4
AUR62042903 Chenopodium quinoa HOM05D001537 ORTHO05D002595 1.0e-59 235.3 542 35.2
AT1G20720 Arabidopsis thaliana HOM05D001537 ORTHO05D002595 2.3e-59 234.2 543 35.5
Cc00_g25330 Coffea canephora HOM05D001537 ORTHO05D002595 1.5e-58 231.5 545 34.1
Solyc10g079510.3 Solanum lycopersicum HOM05D001537 ORTHO05D002595 1.5e-58 231.5 508 35.0
Carub.0001s2019 Capsella rubella HOM05D001537 ORTHO05D002595 1.2e-57 228.4 550 35.3
Aqoxy5G01007 Aquilegia oxysepala HOM05D001537 ORTHO05D002595 2.1e-57 227.6 542 34.5
Aa31LG7G4910 Aethionema arabicum HOM05D001537 ORTHO05D002595 1.2e-55 221.9 532 35.0
EL10Ac1g01914 Beta vulgaris HOM05D001537 ORTHO05D002595 1.7e-54 218.0 553 33.3
Ah.11g041620 Amaranthus hybridus HOM05D001537 ORTHO05D002595 2.2e-54 217.6 524 33.0
PSO210G4823 Papaver somniferum HOM05D001537 ORTHO05D002595 3.8e-54 216.9 574 31.9
Eucgr.F03572 Eucalyptus grandis HOM05D001537 ORTHO05D002595 4.2e-53 213.4 528 32.6
MSTRG.986 Avicennia marina HOM05D001537 ORTHO05D002595 5.4e-53 213.0 542 33.6
Carub.0001s2020 Capsella rubella HOM05D001537 ORTHO05D002595 7.1e-53 212.6 483 35.4
BolC5t30633H Brassica oleracea HOM05D001537 ORTHO05D002595 1.2e-52 211.8 535 32.9
Cpa.g.sc26.169 Carica papaya HOM05D001537 ORTHO05D017787 1.2e-52 211.8 563 34.1
Thhalv10009302m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 2.7e-52 210.7 503 35.0
BraA06t24777Z Brassica rapa HOM05D001537 ORTHO05D002595 7.8e-52 209.1 532 33.3
Migut.O00316 Erythranthe guttata HOM05D001537 ORTHO05D002595 7.8e-52 209.1 545 34.1
SGA_v2.0_scaffold235G43685 Striga asiatica HOM05D001537 ORTHO05D002595 1.3e-51 208.4 518 31.9
C05p19320 Brassica napus HOM05D001537 ORTHO05D002595 3.9e-51 206.8 532 32.7
A06p16720 Brassica napus HOM05D001537 ORTHO05D002595 8.7e-51 205.7 532 32.7
Lsat_1_v5_gn_2_860 Lactuca sativa HOM05D001537 ORTHO05D002595 4.8e-49 199.9 516 33.3
Sp1g18440 Schrenkiella parvula HOM05D001537 ORTHO05D002595 1.8e-48 198.0 520 33.5
ECA238G0307 Erigeron canadensis HOM05D001537 ORTHO05D002595 3.4e-47 193.7 538 31.8
Lsat_1_v5_gn_2_1140 Lactuca sativa HOM05D001537 ORTHO05D002595 8.4e-46 189.1 505 32.5
AL1G33740 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 2.1e-44 184.5 455 33.6
AT1G20750 Arabidopsis thaliana HOM05D001537 ORTHO05D002595 3.0e-43 180.6 496 32.3
Glyma.17G262000 Glycine max HOM05D001537 ORTHO05D038924 4.3e-42 176.8 140 68.6
HanXRQChr06g0185181 Helianthus annuus HOM05D001537 ORTHO05D002595 3.6e-41 173.7 518 30.1
vmacro21796 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 3.6e-41 173.7 210 43.3
SHI07968 Sapria himalayana HOM05D001537 ORTHO05D002595 3.3e-34 150.6 449 27.4
Oeu029250.4 Olea europaea HOM05D001537 ORTHO05D002595 5.6e-34 149.8 506 29.2
HPP92_025944 Vanilla planifolia HOM05D001537 ORTHO05D002595 2.0e-31 141.4 466 29.2
ATR0807G057 Amborella trichopoda HOM05D001537 ORTHO05D002595 2.2e-30 137.9 531 28.8
TAR628G1155 Trochodendron aralioides HOM05D001537 ORTHO05D002595 2.9e-30 137.5 148 48.6
HanXRQChr06g0185191 Helianthus annuus HOM05D001537 ORTHO05D002595 4.9e-30 136.7 524 27.5
MELO3C017034.2 Cucumis melo HOM05D001537 ORTHO05D002595 5.5e-29 133.3 441 28.3
Thhalv10006615m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 7.1e-29 132.9 529 27.6
BraA09t36916Z Brassica rapa HOM05D001537 ORTHO05D002595 1.2e-28 132.1 231 39.8
C09p15070 Brassica napus HOM05D001537 ORTHO05D002595 3.5e-28 130.6 216 41.7
BolC9t54411H Brassica oleracea HOM05D001537 ORTHO05D002595 3.5e-28 130.6 216 41.7
BcaNung04092 Brassica carinata HOM05D001537 ORTHO05D002595 2.3e-27 127.9 125 55.2
Zm00001eb320860 Zea mays HOM05D001537 ORTHO05D002595 3.3e-26 124.0 565 23.2
CARHR021180 Cardamine hirsuta HOM05D001537 ORTHO05D002595 6.9e-24 116.3 363 30.0
COL.COLO4_07212 Corchorus olitorius HOM05D001537 ORTHO05D002595 1.4e-21 108.6 318 34.0
BcaB07g32070 Brassica carinata HOM05D001537 ORTHO05D002595 6.1e-20 103.2 508 26.2
CiPaw.07G136300 Carya illinoinensis HOM05D001537 ORTHO05D002595 3.1e-16 90.9 117 43.6
BcaC04g22810 Brassica carinata HOM05D001537 ORTHO05D002595 6.9e-16 89.7 209 36.4
Os09g0551800 Oryza sativa ssp. japonica HOM05D001537 ORTHO05D002595 1.1e-13 82.4 465 24.3
TAR628G1618 Trochodendron aralioides HOM05D001537 ORTHO05D002595 2.3e-11 74.7 122 36.9
vmacro21795 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 3.9e-11 73.9 94 43.6
arahy.Tifrunner.gnm1.ann1.10R7VE Arachis hypogaea HOM05D001537 ORTHO05D038924 4.3e-10 70.5 41 78.0
TAR628G0210 Trochodendron aralioides HOM05D001537 ORTHO05D002595 5.7e-10 70.1 220 34.1
CsaV3_4G037390 Cucumis sativus L. HOM05D001537 ORTHO05D002595 9.7e-10 69.3 53 56.6
CARHR021190 Cardamine hirsuta HOM05D001537 ORTHO05D002595 2.4e-08 64.7 48 54.2
A09p12720 Brassica napus HOM05D001537 ORTHO05D002595 1.2e-07 62.4 62 43.5
SMO340G0319 Selaginella moellendorffii HOM05D001537 ORTHO05D002595 5.0e-06 57.0 202 23.8
SEGI_04288 Sequoiadendron giganteum HOM05D001537 ORTHO05D002595 5.0e-06 57.0 115 26.1


User provided reference genes

Program Settings