Gene: Solyc10g079510.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g079510.3
  • Transcript Identifier Solyc10g079510.3.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 60151485-60165468 : negative

Gene Family Information

  • ID HOM05D001537
  • #Genes/#Species 414/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g079510.3.1
  • uniprot A0A3Q7JF32
  • gene_id Solyc10g079510

Descriptions

  • Description RAD3-like DNA-binding helicase protein (AHRD V3.3 *** A0A1P8AV25_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IBA
GOA Databasenucleotide-excision repair
GO:1990918
IBA
GOA Databasedouble-strand break repair involved in meiotic recombination
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003678
IBA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003677
IEA
InterProDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G20720
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010614 DEAD2
IPR006555 ATP-dependent helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR042493 Bacterial type XPD DNA helicase, FeS cluster domain
IPR006554 Helicase-like, DEXD box c2 type
Mapman id Description
14.8.2 DNA damage response.interstrand crosslink (ICL) repair.dsDNA helicase (FANCJ)