Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24626 Trifolium pratense HOM05D000882 ORTHO05D001142 1.3e-42 176.0 88 100.0
Medtr4g121140 Medicago truncatula HOM05D000882 ORTHO05D001142 3.7e-34 147.9 86 86.0
Ca_21118_v3 Cicer arietinum L. HOM05D000882 ORTHO05D001142 7.9e-29 130.2 86 76.7
VMungo1080G1773 Vigna mungo HOM05D000882 ORTHO05D001142 1.8e-28 129.0 86 73.3
Psat4g009280 Pisum sativum HOM05D000882 ORTHO05D001142 3.0e-28 128.3 86 75.6
Phvul.005G040600 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 5.1e-28 127.5 86 73.3
Glyma.02G203000 Glycine max HOM05D000882 ORTHO05D001142 8.7e-28 126.7 87 72.4
VMungo1215G1818 Vigna mungo HOM05D000882 ORTHO05D001142 3.3e-27 124.8 86 72.1
Glyma.17G074700 Glycine max HOM05D000882 ORTHO05D001142 8.2e-26 120.2 84 75.0
Lalb_Chr08g0234101 Lupinus albus HOM05D000882 ORTHO05D001142 1.1e-25 119.8 87 70.1
Lalb_Chr13g0300911 Lupinus albus HOM05D000882 ORTHO05D001142 1.4e-25 119.4 84 67.9
arahy.Tifrunner.gnm1.ann1.WR01F1 Arachis hypogaea HOM05D000882 ORTHO05D001142 5.8e-24 114.0 87 70.1
arahy.Tifrunner.gnm1.ann1.40JS6F Arachis hypogaea HOM05D000882 ORTHO05D001142 2.2e-23 112.1 86 69.8
Lj4g0027533 Lotus japonicus HOM05D000882 ORTHO05D001142 4.2e-22 107.8 86 66.3
Duzib150G0034 Durio zibethinus HOM05D000882 ORTHO05D001142 9.3e-22 106.7 89 61.8
Duzib151G0910 Durio zibethinus HOM05D000882 ORTHO05D001142 7.9e-21 103.6 89 59.6
Medtr6g092010 Medicago truncatula HOM05D000882 ORTHO05D001142 7.9e-21 103.6 84 60.7
arahy.Tifrunner.gnm1.ann1.GHMM2H Arachis hypogaea HOM05D000882 ORTHO05D001142 6.7e-20 100.5 130 48.5
arahy.Tifrunner.gnm1.ann1.IVS2PB Arachis hypogaea HOM05D000882 ORTHO05D001142 6.7e-20 100.5 87 62.1
Gohir.D02G012800 Gossypium hirsutum HOM05D000882 ORTHO05D001142 8.7e-20 100.1 89 57.3
Gorai.005G016300 Gossypium raimondii HOM05D000882 ORTHO05D001142 8.7e-20 100.1 89 57.3
Medtr2g063913 Medicago truncatula HOM05D000882 ORTHO05D001142 2.5e-19 98.6 87 59.8
QL02p093012 Quercus lobata HOM05D000882 ORTHO05D001142 4.3e-19 97.8 90 57.8
Thecc.09G188000 Theobroma cacao HOM05D000882 ORTHO05D001142 9.7e-19 96.7 75 60.0
Lj4g0020238 Lotus japonicus HOM05D000882 ORTHO05D001142 6.3e-18 94.0 87 57.5
Medtr2g063873 Medicago truncatula HOM05D000882 ORTHO05D001142 6.3e-18 94.0 87 55.2
arahy.Tifrunner.gnm1.ann1.SC0NT9 Arachis hypogaea HOM05D000882 ORTHO05D001142 8.2e-18 93.6 87 56.3
RcHm_v2.0_Chr7g0234511 Rosa chinensis HOM05D000882 ORTHO05D001142 8.2e-18 93.6 86 57.0
Gohir.A02G012100 Gossypium hirsutum HOM05D000882 ORTHO05D001142 1.1e-17 93.2 86 53.5
Medtr2g063837 Medicago truncatula HOM05D000882 ORTHO05D001142 1.4e-17 92.8 79 55.7
RcHm_v2.0_Chr2g0085821 Rosa chinensis HOM05D000882 ORTHO05D001142 2.4e-17 92.0 86 54.7
COL.COLO4_28864 Corchorus olitorius HOM05D000882 ORTHO05D001142 3.1e-17 91.7 86 58.1
CiPaw.16G114000 Carya illinoinensis HOM05D000882 ORTHO05D001142 4.1e-17 91.3 89 56.2
MD09G1131300 Malus domestica HOM05D000882 ORTHO05D001142 5.3e-17 90.9 86 58.1
Potri.018G108300 Populus trichocarpa HOM05D000882 ORTHO05D001142 5.3e-17 90.9 89 56.2
CiPaw.15G175300 Carya illinoinensis HOM05D000882 ORTHO05D001142 9.0e-17 90.1 86 50.0
Eucgr.C02587 Eucalyptus grandis HOM05D000882 ORTHO05D001142 9.0e-17 90.1 88 53.4
Sed0011489 Sechium edule HOM05D000882 ORTHO05D001142 1.2e-16 89.7 86 54.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-16 89.4 49 77.6
Atru.chr7.97 Acer truncatum HOM05D000882 ORTHO05D001142 2.0e-16 89.0 86 54.7
arahy.Tifrunner.gnm1.ann1.YWG9MJ Arachis hypogaea HOM05D000882 ORTHO05D001142 2.0e-16 89.0 49 77.6
ClCG08G000930 Citrullus lanatus HOM05D000882 ORTHO05D001142 4.5e-16 87.8 86 53.5
CsaV3_5G040120 Cucumis sativus L. HOM05D000882 ORTHO05D001142 5.9e-16 87.4 86 53.5
Sed0007584 Sechium edule HOM05D000882 ORTHO05D001142 5.9e-16 87.4 86 52.3
FAN04G1875 Fragaria x ananassa HOM05D000882 ORTHO05D001142 7.7e-16 87.0 92 51.1
FAN23G2267 Fragaria x ananassa HOM05D000882 ORTHO05D001142 1.7e-15 85.9 90 53.3
MELO3C022188.2 Cucumis melo HOM05D000882 ORTHO05D001142 2.2e-15 85.5 86 54.7
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 2.2e-15 85.5 93 52.7
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 2.2e-15 85.5 93 52.7
Cfa019391 Carpinus fangiana HOM05D000882 ORTHO05D001142 5.0e-15 84.3 73 57.5
FvH4_1g01060 Fragaria vesca HOM05D000882 ORTHO05D001142 6.5e-15 84.0 90 52.2
FAN28G0253 Fragaria x ananassa HOM05D000882 ORTHO05D001142 6.5e-15 84.0 90 52.2
Haze_19222 Corylus avellana HOM05D000882 ORTHO05D001142 8.5e-15 83.6 91 51.6
FAN19G0326 Fragaria x ananassa HOM05D000882 ORTHO05D001142 1.4e-14 82.8 90 52.2
FAN26G2235 Fragaria x ananassa HOM05D000882 ORTHO05D001142 1.4e-14 82.8 90 51.1
Medtr2g048610 Medicago truncatula HOM05D000882 ORTHO05D001142 2.5e-14 82.0 50 70.0
TWI32G1214 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 3.2e-14 81.6 115 45.2
THA.LOC104816865 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 5.5e-14 80.9 90 47.8
THA.LOC104816771 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 7.2e-14 80.5 86 48.8
Dinv41388 Davidia involucrata HOM05D000882 ORTHO05D001142 9.4e-14 80.1 89 52.8
ECA233G4298 Erigeron canadensis HOM05D000882 ORTHO05D001142 9.4e-14 80.1 87 50.6
Manes.06G019000 Manihot esculenta HOM05D000882 ORTHO05D001142 1.2e-13 79.7 67 56.7
Lsat_1_v5_gn_8_38821 Lactuca sativa HOM05D000882 ORTHO05D001142 1.6e-13 79.3 91 51.6
MD06G1145600 Malus domestica HOM05D000882 ORTHO05D001142 2.7e-13 78.6 86 46.5
TAR626G0487 Trochodendron aralioides HOM05D000882 ORTHO05D001142 2.7e-13 78.6 90 47.8
ECA234G2782 Erigeron canadensis HOM05D000882 ORTHO05D001142 4.6e-13 77.8 88 44.3
Lj6A807T94 Lonicera japonica HOM05D000882 ORTHO05D001142 4.6e-13 77.8 86 50.0
Ciclev10010299m.g Citrus clementina HOM05D000882 ORTHO05D001142 1.8e-12 75.9 86 47.7
Hma1.2p1_0028F.1_g017460 Hydrangea macrophylla HOM05D000882 ORTHO05D001142 1.8e-12 75.9 85 51.8
HanXRQChr07g0188451 Helianthus annuus HOM05D000882 ORTHO05D001142 3.0e-12 75.1 91 52.7
Phvul.003G156800 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 3.9e-12 74.7 39 82.1
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 5.1e-12 74.3 89 42.7
Peaxi162Scf00594g00525 Petunia axillaris HOM05D000882 ORTHO05D001142 5.1e-12 74.3 80 48.8
Prupe.7G261400 Prunus persica HOM05D000882 ORTHO05D001142 5.1e-12 74.3 87 49.4
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 6.7e-12 73.9 89 41.6
CAN.G1424.9 Capsicum annuum HOM05D000882 ORTHO05D001142 6.7e-12 73.9 90 43.3
DCAR_031117 Daucus carota HOM05D000882 ORTHO05D003410 6.7e-12 73.9 88 48.9
Solyc07g005450.3 Solanum lycopersicum HOM05D000882 ORTHO05D001142 6.7e-12 73.9 90 42.2
Sopen07g001340 Solanum pennellii HOM05D000882 ORTHO05D001142 6.7e-12 73.9 90 42.2
C03p14660 Brassica napus HOM05D000882 ORTHO05D001142 1.1e-11 73.2 89 41.6
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 1.1e-11 73.2 89 41.6
Migut.B00998 Erythranthe guttata HOM05D000882 ORTHO05D001142 1.1e-11 73.2 90 43.3
SHI02814 Sapria himalayana HOM05D000882 ORTHO05D001142 1.1e-11 73.2 84 46.4
Sp6g19670 Schrenkiella parvula HOM05D000882 ORTHO05D001142 1.1e-11 73.2 91 47.3
Migut.M00493 Erythranthe guttata HOM05D000882 ORTHO05D001142 1.5e-11 72.8 90 41.1
arahy.Tifrunner.gnm1.ann1.LUZF66 Arachis hypogaea HOM05D000882 ORTHO05D001142 2.0e-11 72.4 40 77.5
EL10Ac2g02952 Beta vulgaris HOM05D000882 ORTHO05D001142 2.0e-11 72.4 80 47.5
Cc06_g15150 Coffea canephora HOM05D000882 ORTHO05D001142 2.5e-11 72.0 87 48.3
BcaB01g04470 Brassica carinata HOM05D000882 ORTHO05D001142 3.3e-11 71.6 89 42.7
CSS0041596 Camellia sinensis var. sinensis HOM05D000882 ORTHO05D001142 3.3e-11 71.6 68 44.1
Lj8A601G12 Lonicera japonica HOM05D000882 ORTHO05D001142 3.3e-11 71.6 61 50.8
MSTRG.26284 Avicennia marina HOM05D000882 ORTHO05D001142 4.3e-11 71.2 86 44.2
A10p16170 Brassica napus HOM05D000882 ORTHO05D001142 4.3e-11 71.2 87 47.1
BraA10t43612Z Brassica rapa HOM05D000882 ORTHO05D001142 4.3e-11 71.2 87 47.1
Manes.08G068000 Manihot esculenta HOM05D000882 ORTHO05D001142 4.3e-11 71.2 64 54.7
Peaxi162Scf00118g02021 Petunia axillaris HOM05D000882 ORTHO05D001142 4.3e-11 71.2 86 45.3
Sopen00g012560 Solanum pennellii HOM05D000882 ORTHO05D001142 4.3e-11 71.2 51 54.9
BcaC04g19919 Brassica carinata HOM05D000882 ORTHO05D001142 5.7e-11 70.9 87 47.1
C09p49840 Brassica napus HOM05D000882 ORTHO05D001142 5.7e-11 70.9 87 47.1
BolC9t57833H Brassica oleracea HOM05D000882 ORTHO05D001142 5.7e-11 70.9 87 47.1
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 5.7e-11 70.9 87 41.4
Nitab4.5_0006527g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 5.7e-11 70.9 90 42.2
Hund22135 Selenicereus undatus HOM05D000882 ORTHO05D001142 5.7e-11 70.9 89 48.3
Solyc07g005460.4 Solanum lycopersicum HOM05D000882 ORTHO05D001142 5.7e-11 70.9 86 40.7
AUR62005899 Chenopodium quinoa HOM05D000882 ORTHO05D001142 9.7e-11 70.1 89 44.9
Nitab4.5_0005188g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 9.7e-11 70.1 84 41.7
PGR102G0086 Punica granatum HOM05D000882 ORTHO05D001142 1.3e-10 69.7 85 45.9
Lsat_1_v5_gn_4_18440 Lactuca sativa HOM05D000882 ORTHO05D001142 1.7e-10 69.3 54 55.6
HanXRQChr08g0214261 Helianthus annuus HOM05D000882 ORTHO05D001142 2.2e-10 68.9 79 53.2
AT5G58003 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 2.8e-10 68.6 66 48.5
AUR62042619 Chenopodium quinoa HOM05D000882 ORTHO05D001142 2.8e-10 68.6 89 43.8
CARHR271800 Cardamine hirsuta HOM05D000882 ORTHO05D001142 3.7e-10 68.2 85 43.5
Hund22296 Selenicereus undatus HOM05D000882 ORTHO05D001142 3.7e-10 68.2 89 47.2
Nn2g12339 Nelumbo nucifera HOM05D000882 ORTHO05D001142 4.8e-10 67.8 88 43.2
Psat1g015800 Pisum sativum HOM05D000882 ORTHO05D001142 4.8e-10 67.8 39 71.8
TPR.G3638 Trifolium pratense HOM05D000882 ORTHO05D001142 6.3e-10 67.4 61 50.8
Aa31LG3G13800 Aethionema arabicum HOM05D000882 ORTHO05D001142 8.2e-10 67.0 50 56.0
AL8G34090 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 8.2e-10 67.0 83 45.8
BcaB08g36159 Brassica carinata HOM05D000882 ORTHO05D001142 8.2e-10 67.0 87 44.8
AUR62016253 Chenopodium quinoa HOM05D000882 ORTHO05D001142 1.1e-09 66.6 89 43.8
Sc02g0006320 Simmondsia chinensis HOM05D000882 ORTHO05D001142 1.8e-09 65.9 50 52.0
Os05g0390500 Oryza sativa ssp. japonica HOM05D000882 ORTHO05D001142 5.3e-09 64.3 62 54.8
Lj4g0027420 Lotus japonicus HOM05D000882 ORTHO05D001142 6.9e-09 63.9 59 50.8
COL.COLO4_27950 Corchorus olitorius HOM05D000882 ORTHO05D001142 9.1e-09 63.5 86 46.5
MBI14_g30965_MAGBIO Magnolia biondii HOM05D000882 ORTHO05D001142 9.1e-09 63.5 65 41.5
Lj1g0001299 Lotus japonicus HOM05D000882 ORTHO05D001142 1.2e-08 63.2 39 71.8
Carub.0008s1854 Capsella rubella HOM05D000882 ORTHO05D001142 1.5e-08 62.8 85 42.4
CARHR186020 Cardamine hirsuta HOM05D000882 ORTHO05D001142 2.6e-08 62.0 55 47.3
PSO063G7635 Papaver somniferum HOM05D000882 ORTHO05D001142 2.6e-08 62.0 89 37.1
MBI14_g43814_MAGBIO Magnolia biondii HOM05D000882 ORTHO05D001142 4.5e-08 61.2 48 52.1
PSO782G4611 Papaver somniferum HOM05D000882 ORTHO05D001142 4.5e-08 61.2 89 37.1
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 1.0e-07 60.1 95 43.2
CDE04G0391 Ceratophyllum demersum HOM05D000882 ORTHO05D001142 1.3e-07 59.7 89 39.3
QL04p076171 Quercus lobata HOM05D000882 ORTHO05D001142 2.2e-07 58.9 49 51.0
HPP92_004757 Vanilla planifolia HOM05D000882 ORTHO05D001142 2.2e-07 58.9 89 40.4
Atru.chr9.2325 Acer truncatum HOM05D000882 ORTHO05D001142 3.8e-07 58.2 55 40.0
AUR62016941 Chenopodium quinoa HOM05D000882 ORTHO05D001142 3.8e-07 58.2 50 56.0
RcHm_v2.0_Chr7g0234711 Rosa chinensis HOM05D000882 ORTHO05D001142 5.0e-07 57.8 90 45.6
RcHm_v2.0_Chr7g0234841 Rosa chinensis HOM05D000882 ORTHO05D001142 5.0e-07 57.8 39 64.1
Thhalv10013455m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 6.5e-07 57.4 88 38.6
AUR62014762 Chenopodium quinoa HOM05D000882 ORTHO05D001142 1.1e-06 56.6 68 45.6
Peaxi162Scf00311g00511 Petunia axillaris HOM05D000882 ORTHO05D001142 1.9e-06 55.8 45 51.1
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 2.5e-06 55.5 95 41.1
Lj8C602G10 Lonicera japonica HOM05D000882 ORTHO05D001142 2.5e-06 55.5 41 58.5
TWI63G1431 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 5.5e-06 54.3 39 64.1


User provided reference genes

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