Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 7.2e-278 959.9 477 100.0
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 7.3e-246 853.6 484 87.0
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 9.6e-238 826.6 485 85.8
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 6.5e-218 760.8 472 80.3
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 3.5e-216 755.0 472 79.7
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 5.9e-211 737.6 488 77.3
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.3e-210 736.5 479 76.0
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.8e-207 726.1 471 78.1
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 4.3e-206 721.5 478 74.3
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 7.7e-187 657.5 469 70.1
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.3e-186 656.8 470 70.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.9e-185 652.9 475 69.3
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.4e-183 646.7 473 70.0
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 4.0e-183 645.2 468 68.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.7e-181 639.8 467 67.9
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.1e-180 637.1 471 68.6
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 4.1e-180 635.2 471 67.3
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.0e-178 630.6 476 66.8
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 9.4e-177 624.0 474 66.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.8e-175 619.8 472 66.9
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 7.5e-174 614.4 474 65.4
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 1.7e-173 613.2 470 66.0
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.8e-173 612.5 471 66.2
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.7e-173 612.1 474 66.7
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.7e-173 612.1 477 64.6
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.4e-172 610.1 472 65.0
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 3.1e-172 609.0 475 64.6
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 4.1e-172 608.6 473 65.5
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 5.4e-172 608.2 473 65.3
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.2e-171 607.1 477 65.2
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.2e-171 607.1 475 65.3
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.2e-171 607.1 475 66.7
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 3.5e-171 605.5 482 63.7
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.3e-170 603.6 469 64.6
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 1.7e-170 603.2 469 64.4
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 2.2e-170 602.8 469 64.2
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.1e-169 600.5 340 87.4
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.1e-169 600.5 469 64.6
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 7.2e-169 597.8 445 66.3
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 9.4e-169 597.4 467 64.0
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 9.4e-169 597.4 471 63.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 9.4e-169 597.4 471 63.5
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 6.1e-168 594.7 480 62.9
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 8.0e-168 594.3 472 62.9
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.8e-167 593.2 467 63.4
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 4.0e-167 592.0 473 62.8
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 8.8e-167 590.9 488 61.3
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 2.6e-166 589.3 470 62.3
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 2.6e-166 589.3 468 63.0
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.6e-166 589.3 472 62.9
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 9.8e-166 587.4 476 62.6
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.3e-165 587.0 475 63.4
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 2.2e-165 586.3 474 63.1
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.1e-164 583.9 469 62.5
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.1e-164 583.9 479 61.4
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 3.5e-163 578.9 481 60.3
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 1.7e-162 576.6 481 60.9
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 2.3e-162 576.2 464 61.9
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.3e-162 576.2 481 60.5
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 2.9e-162 575.9 480 63.1
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 3.8e-162 575.5 471 60.7
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 5.0e-162 575.1 486 60.3
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 6.6e-162 574.7 483 60.5
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 1.1e-161 573.9 470 62.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 5.6e-161 571.6 483 59.4
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 7.3e-161 571.2 485 59.8
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 2.8e-160 569.3 488 59.4
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 2.8e-160 569.3 483 60.2
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 4.7e-160 568.5 444 62.2
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 5.2e-159 565.1 483 60.0
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 8.9e-159 564.3 483 60.0
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.2e-158 563.9 485 59.6
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.5e-158 563.5 485 59.6
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 3.5e-155 552.4 470 61.3
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 1.7e-154 550.1 495 59.0
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 5.8e-150 535.0 329 78.4
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 4.9e-149 531.9 471 57.7
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 8.3e-149 531.2 460 57.8
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.1e-148 530.8 470 57.9
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.2e-147 527.3 474 57.2
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.6e-147 526.9 373 68.6
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.3e-145 519.2 474 56.3
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 2.4e-140 503.1 448 58.3
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 7.1e-140 501.5 491 54.6
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 3.8e-133 479.2 376 63.8
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 4.9e-133 478.8 398 59.0
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.9e-130 469.2 316 72.2
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 4.0e-127 459.1 497 47.9
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 1.3e-120 437.6 435 50.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 4.2e-116 422.5 488 45.9
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 4.0e-111 406.0 426 50.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 4.2e-108 396.0 246 77.6
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.6e-94 350.1 252 69.0
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 9.3e-92 341.7 390 45.4
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 8.7e-90 335.1 386 44.0
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 8.7e-90 335.1 431 40.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 3.7e-88 329.7 363 47.4
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 2.2e-85 320.5 397 40.8
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.1e-84 318.2 277 59.6
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.5e-84 317.0 296 56.1
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 2.3e-82 310.5 272 59.9
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 5.1e-82 309.3 258 59.3
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 9.7e-81 305.1 316 53.2
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 2.2e-80 303.9 448 40.0
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.0e-69 266.2 207 61.4
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.4e-66 258.1 251 54.6
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 1.8e-66 257.7 202 65.8
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 2.7e-59 233.8 236 54.2
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.8e-56 223.8 186 64.5
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 2.5e-52 210.7 221 50.2
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 2.3e-50 204.1 125 73.6
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 1.3e-48 198.4 118 76.3
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 3.5e-38 163.7 138 60.1
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 3.3e-28 130.6 108 62.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 8.1e-27 125.9 116 55.2
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 3.7e-24 117.1 97 63.9
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 1.5e-09 68.6 201 29.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 2.0e-09 68.2 44 70.5
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 3.4e-09 67.4 201 29.9
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 2.9e-08 64.3 33 84.8
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 2.7e-06 57.8 70 47.1


User provided reference genes

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