Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.8e-177 625.2 316 100.0
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.0e-150 537.0 316 87.3
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.9e-149 532.7 316 87.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.6e-148 528.5 316 86.1
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 6.3e-145 517.7 316 84.2
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 5.3e-144 514.6 316 84.5
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 4.5e-143 511.5 316 84.2
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 5.0e-142 508.1 316 82.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 5.0e-142 508.1 316 82.3
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 8.5e-142 507.3 316 82.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 9.7e-138 493.8 316 79.7
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 7.0e-136 487.6 316 80.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.8e-123 444.5 314 73.6
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.3e-121 440.3 320 71.9
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.2e-121 439.5 320 72.2
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.8e-121 439.1 318 72.6
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.4e-120 436.0 316 73.1
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 5.4e-120 434.9 320 70.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 5.4e-120 434.9 316 73.1
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.7e-119 432.6 316 72.5
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 5.0e-118 428.3 316 72.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 6.6e-118 427.9 318 71.4
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.1e-117 427.2 319 69.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.9e-117 426.4 318 70.4
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-117 426.4 315 70.5
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-117 426.4 315 70.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.3e-117 424.5 316 69.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.3e-117 424.5 316 69.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 9.5e-117 424.1 316 70.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.5e-117 424.1 316 70.6
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.2e-116 423.7 316 69.6
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.2e-116 423.7 316 70.6
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.1e-116 422.9 316 69.9
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-116 422.9 316 71.5
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 8.0e-116 421.0 320 70.6
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.4e-115 420.2 316 70.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-115 419.9 316 70.6
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.8e-115 419.9 316 70.6
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.3e-115 419.5 316 70.6
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.1e-115 419.1 316 70.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.2e-115 418.3 314 70.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.5e-114 416.8 316 69.3
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.6e-114 416.0 316 68.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 3.4e-114 415.6 317 69.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 5.8e-114 414.8 320 68.4
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.8e-114 414.1 320 69.4
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.7e-113 413.3 319 69.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.7e-113 413.3 321 67.6
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.9e-113 412.5 316 69.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.1e-112 410.6 326 67.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-112 410.6 320 69.1
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.4e-112 410.2 319 68.0
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.4e-112 409.5 316 68.7
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 7.0e-112 407.9 317 67.2
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.0e-111 406.4 316 68.4
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.0e-111 406.4 317 66.2
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.3e-110 402.9 316 68.4
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 5.0e-110 401.7 317 67.8
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.6e-110 401.0 329 66.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.1e-109 400.6 316 66.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 4.3e-109 398.7 356 62.4
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.3e-109 398.7 316 66.5
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.6e-109 398.3 316 67.1
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 7.3e-109 397.9 316 67.4
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 9.5e-109 397.5 316 66.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.1e-108 396.4 352 61.6
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.1e-108 396.4 316 66.1
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 3.6e-108 395.6 316 66.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.7e-108 395.2 316 66.5
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.1e-107 394.0 317 66.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.1e-107 394.0 317 65.9
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 3.1e-107 392.5 296 70.9
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 3.1e-107 392.5 316 65.8
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.2e-107 391.7 322 66.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.2e-106 390.6 316 66.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.2e-106 390.6 321 66.4
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 2.0e-106 389.8 316 66.8
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 3.4e-106 389.0 317 66.2
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 66.8
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 65.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 66.5
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 65.5
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 65.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 4.4e-106 388.7 316 66.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.4e-106 388.7 321 66.7
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 5.8e-106 388.3 323 65.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.3e-105 387.1 277 75.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-105 387.1 323 63.8
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.7e-105 386.7 316 63.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.2e-105 386.3 318 64.8
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 4.9e-105 385.2 316 66.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.4e-104 382.9 318 66.4
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 7.1e-104 381.3 316 63.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 9.2e-104 380.9 316 64.9
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 7.8e-103 377.9 317 62.8
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-102 377.5 317 62.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 7.3e-101 371.3 339 59.9
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 6.8e-99 364.8 346 57.8
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.6e-98 362.8 220 82.3
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.4e-98 362.5 328 59.8
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.7e-97 359.0 249 74.3
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.7e-94 350.1 338 58.6
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 5.1e-94 348.6 201 85.6
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.8e-92 342.8 259 69.1
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 6.2e-92 341.7 313 57.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.8e-91 340.1 292 63.7
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 6.4e-89 331.6 212 77.4
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 7.1e-88 328.2 203 78.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.2e-87 327.4 315 54.9
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 7.8e-87 324.7 320 58.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-86 323.9 275 64.4
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.8e-84 316.2 316 58.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.6e-84 315.8 316 54.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 5.8e-82 308.5 319 54.2
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.8e-81 305.8 273 63.0
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.4e-80 303.1 257 65.0
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 6.6e-78 295.0 196 82.7
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.6e-76 289.3 182 78.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.7e-65 253.8 190 69.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 7.4e-61 238.4 296 48.6
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.9e-59 231.9 191 67.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.0e-58 230.3 412 38.8
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 6.1e-55 218.8 253 55.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 7.4e-53 211.8 379 39.8
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.7e-49 200.7 227 49.8
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.4e-48 194.9 117 83.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.9e-41 173.3 249 43.8
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 5.5e-40 169.1 200 49.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 7.2e-40 168.7 132 75.8
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-39 167.2 95 87.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-38 164.5 317 38.8
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-35 154.8 122 67.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 3.1e-35 153.3 96 82.3
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.2e-34 151.4 107 68.2
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.9e-33 146.7 208 42.8
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.2e-32 142.9 93 79.6
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.7e-31 140.2 125 60.0
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.7e-31 140.2 125 60.0
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.7e-28 131.0 80 80.0
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.8e-27 127.5 198 43.4
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-26 123.6 244 38.9
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 8.5e-25 118.6 148 52.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.4e-24 115.2 95 65.3
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.2e-21 108.2 240 35.8
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 3.8e-09 66.6 36 77.8
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 8.6e-09 65.5 33 84.8
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 8.6e-09 65.5 63 60.3
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-08 64.7 111 43.2
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 9.5e-08 62.0 43 69.8
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.8e-07 60.5 46 65.2
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.6e-07 60.1 57 61.4


User provided reference genes

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