Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 8.7e-102 373.6 188 100.0
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 8.2e-84 313.9 174 89.1
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.0e-82 309.3 175 86.9
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 5.5e-80 301.2 176 85.2
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 4.4e-77 291.6 175 81.1
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 5.7e-77 291.2 177 81.4
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 7.5e-77 290.8 177 82.5
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 7.0e-75 284.3 161 85.7
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.0e-70 270.4 177 77.4
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 3.7e-68 261.9 169 78.1
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 8.3e-68 260.8 169 78.1
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 4.2e-64 248.4 175 73.1
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 4.7e-63 245.0 175 70.3
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 1.0e-62 243.8 175 71.4
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.0e-62 243.8 175 72.0
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 4.0e-62 241.9 175 69.1
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 5.2e-62 241.5 175 72.0
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 3.4e-61 238.8 175 69.1
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 4.4e-61 238.4 175 70.3
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 4.4e-61 238.4 176 71.0
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 5.7e-61 238.0 173 69.9
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.3e-60 236.9 178 68.0
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.7e-60 236.5 176 71.0
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.7e-60 236.5 175 69.1
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 2.8e-60 235.7 175 69.7
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 3.7e-60 235.3 176 68.8
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 4.9e-60 235.0 175 69.1
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 6.3e-60 234.6 175 68.0
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.8e-59 233.0 177 68.4
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 4.1e-59 231.9 190 65.3
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 5.4e-59 231.5 175 66.3
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 7.0e-59 231.1 175 66.3
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.6e-58 229.9 182 67.6
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 5.9e-58 228.0 175 68.0
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.0e-57 227.3 175 65.1
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 4.3e-56 221.9 202 59.4
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 5.6e-56 221.5 175 65.1
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.6e-55 219.9 181 62.4
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 2.1e-55 219.5 178 65.2
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 2.8e-55 219.2 181 61.3
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 3.6e-55 218.8 176 63.6
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 4.7e-55 218.4 175 65.7
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 8.0e-55 217.6 179 64.2
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 8.0e-55 217.6 186 61.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 8.0e-55 217.6 182 61.0
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.4e-54 216.9 179 63.7
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.4e-54 216.9 179 64.8
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 3.0e-54 215.7 183 63.9
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 3.0e-54 215.7 178 64.6
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 8.9e-54 214.2 179 63.1
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 4.4e-53 211.8 175 63.4
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 4.4e-53 211.8 196 60.7
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 5.7e-53 211.5 178 64.0
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 9.8e-53 210.7 184 62.5
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.7e-52 209.9 180 62.8
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 2.2e-52 209.5 178 63.5
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.9e-52 209.1 181 63.0
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 3.7e-52 208.8 177 64.4
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.9e-52 208.4 174 63.8
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 6.4e-52 208.0 176 62.5
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.1e-51 207.2 196 59.2
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.1e-51 207.2 200 59.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.4e-51 206.8 212 56.1
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.8e-51 206.5 178 62.4
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 1.8e-51 206.5 178 61.8
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 5.4e-51 204.9 177 63.3
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 9.2e-51 204.1 178 61.8
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 9.2e-51 204.1 209 56.9
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 2.0e-50 203.0 178 61.8
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 2.0e-50 203.0 175 64.0
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 2.0e-50 203.0 185 61.1
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 3.5e-50 202.2 178 62.4
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 3.5e-50 202.2 178 60.7
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 3.5e-50 202.2 177 59.9
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.5e-50 202.2 185 60.5
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 5.9e-50 201.4 177 60.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 7.8e-50 201.1 169 63.3
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 1.0e-49 200.7 180 61.1
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.3e-49 200.3 178 60.1
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.3e-49 200.3 187 59.9
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 2.3e-49 199.5 169 62.7
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 3.0e-49 199.1 180 61.1
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.0e-49 199.1 185 60.0
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 6.6e-49 198.0 179 59.2
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 6.6e-49 198.0 177 61.0
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.1e-48 197.2 168 62.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 1.9e-48 196.4 178 59.0
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 1.9e-48 196.4 178 59.0
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 4.3e-48 195.3 178 58.4
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 7.3e-48 194.5 177 60.5
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.1e-47 193.0 177 59.9
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 4.7e-47 191.8 177 58.8
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.1e-46 189.1 198 55.1
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.1e-46 189.1 177 58.8
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 6.8e-46 188.0 198 55.1
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 2.6e-45 186.0 161 62.7
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.4e-45 185.3 198 54.5
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 5.8e-45 184.9 177 58.2
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 1.3e-44 183.7 147 63.3
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 4.9e-44 181.8 136 68.4
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.1e-43 180.6 174 54.6
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.5e-42 175.6 190 52.1
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.9e-40 169.9 187 50.3
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 7.3e-40 167.9 182 52.2
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.1e-38 162.5 174 55.7
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 4.0e-38 162.2 178 52.8
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.9e-36 156.0 92 84.8
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 2.4e-35 152.9 133 60.9
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 1.2e-34 150.6 157 56.1
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 3.5e-34 149.1 145 59.3
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 3.3e-32 142.5 180 45.0
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 7.6e-29 131.3 152 52.6
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 2.2e-28 129.8 188 37.8
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 5.4e-27 125.2 168 42.9
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 9.2e-27 124.4 122 57.4
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 7.8e-26 121.3 94 63.8
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 7.8e-26 121.3 90 64.4
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 4.2e-19 99.0 194 35.1
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 5.8e-13 78.6 102 49.0
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 6.4e-12 75.1 50 66.0
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.7e-10 69.7 89 48.3
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 1.3e-09 67.4 203 29.6
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.3e-09 66.6 86 47.7
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 2.5e-08 63.2 30 96.7
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.1e-06 57.8 144 27.8
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 5.3e-06 55.5 154 32.5


User provided reference genes

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