Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23813 Trifolium pratense HOM05D003901 ORTHO05D004511 0.0e+00 1409.0 738 100.0
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 0.0e+00 1154.8 698 84.8
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 0.0e+00 1144.8 699 85.1
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 0.0e+00 1127.9 702 82.8
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 0.0e+00 1114.8 698 82.1
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 0.0e+00 1089.7 699 80.1
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 0.0e+00 1088.9 698 80.4
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 4.5e-311 1070.8 701 79.0
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 7.2e-309 1063.5 689 79.7
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 6.8e-299 1030.4 704 76.7
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 3.7e-297 1024.6 701 76.7
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 3.1e-296 1021.5 698 76.6
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 1.6e-295 1019.2 692 76.3
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 1.3e-294 1016.1 695 76.8
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 3.8e-294 1014.6 697 76.5
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 9.4e-293 1010.0 729 72.8
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 9.4e-293 1010.0 729 72.8
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.4e-288 996.1 687 75.0
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 8.0e-284 980.3 724 72.4
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 5.7e-282 974.2 724 71.3
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 1.3e-281 973.0 709 71.8
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 3.7e-281 971.5 692 72.8
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 7.0e-280 967.2 681 72.5
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.0e-278 963.4 694 72.3
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 8.6e-278 960.3 701 70.6
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 8.6e-278 960.3 682 71.7
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 5.6e-277 957.6 676 72.8
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 4.0e-275 951.4 701 71.9
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 1.2e-274 949.9 701 70.8
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 3.4e-274 948.3 700 70.7
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 5.8e-274 947.6 688 71.5
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 4.9e-273 944.5 693 70.7
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.9e-272 942.6 695 70.5
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 7.0e-272 940.6 682 71.8
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 9.2e-272 940.3 676 72.5
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 2.7e-271 938.7 691 71.2
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 4.6e-271 937.9 670 72.4
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 1.3e-270 936.4 699 69.2
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 6.6e-270 934.1 676 72.2
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 2.5e-269 932.2 676 72.0
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 7.3e-269 930.6 682 71.1
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.6e-268 929.5 709 69.5
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 2.1e-268 929.1 695 69.2
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 3.6e-268 928.3 703 69.3
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 3.6e-268 928.3 703 68.8
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 6.2e-268 927.5 695 69.2
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 4.0e-267 924.9 704 68.5
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.4e-266 921.8 696 69.3
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.7e-265 919.5 726 67.1
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 4.9e-265 917.9 672 71.0
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 4.9e-265 917.9 681 70.2
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 6.4e-265 917.5 703 68.8
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 9.2e-264 913.7 709 68.8
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 4.6e-263 911.4 674 68.5
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 4.6e-263 911.4 709 68.7
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 6.0e-263 911.0 684 70.5
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.0e-262 910.2 707 68.0
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 1.7e-262 909.4 682 69.6
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 6.6e-262 907.5 690 68.6
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 8.6e-262 907.1 693 68.8
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 9.5e-261 903.7 703 67.7
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 6.2e-260 901.0 696 66.7
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 2.3e-259 899.0 720 66.2
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 1.3e-257 893.3 667 69.0
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 3.8e-257 891.7 694 67.9
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 5.4e-256 887.9 680 67.9
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 6.0e-255 884.4 670 68.5
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 6.0e-255 884.4 702 65.8
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 3.0e-254 882.1 698 67.3
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 8.6e-254 880.6 677 67.7
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 2.5e-253 879.0 667 68.5
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 5.6e-253 877.9 683 68.2
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 2.1e-252 875.9 677 67.7
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 6.2e-252 874.4 697 66.0
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 5.2e-251 871.3 689 66.2
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 2.6e-250 869.0 758 62.4
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 4.2e-248 861.7 686 67.6
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 5.4e-248 861.3 676 67.2
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 2.7e-247 859.0 673 67.0
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 4.3e-245 851.7 706 64.7
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 7.3e-245 850.9 718 64.1
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 1.8e-243 846.3 693 64.5
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 4.0e-243 845.1 694 64.3
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 5.8e-242 841.3 694 64.1
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 3.5e-239 832.0 700 65.0
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 2.3e-238 829.3 680 65.0
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 6.7e-238 827.8 694 64.4
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 3.3e-237 825.5 711 63.3
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 5.6e-237 824.7 713 63.1
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 9.6e-237 823.9 702 63.8
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 1.6e-236 823.2 714 62.9
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 1.8e-235 819.7 681 62.4
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 3.1e-235 818.9 693 63.1
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 5.3e-235 818.1 693 63.6
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 2.0e-234 816.2 674 63.1
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 3.4e-234 815.5 669 65.6
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 7.6e-234 814.3 711 62.3
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 7.6e-234 814.3 711 62.3
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 7.6e-234 814.3 711 62.3
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 7.6e-234 814.3 699 61.1
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 9.9e-234 813.9 716 62.3
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 1.7e-233 813.1 688 63.1
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 3.8e-233 812.0 610 69.5
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.4e-232 810.1 731 59.2
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 1.4e-232 810.1 623 68.7
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 1.4e-232 810.1 623 68.7
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 1.4e-232 810.1 672 63.2
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 3.2e-232 808.9 722 61.9
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 7.1e-232 807.7 680 64.7
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 7.1e-232 807.7 697 61.4
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 3.3e-229 798.9 723 60.6
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 3.4e-226 788.9 589 70.1
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.7e-225 786.6 709 62.2
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 7.1e-224 781.2 690 60.4
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-220 768.8 577 68.8
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.4e-219 766.9 664 63.3
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 5.3e-219 765.0 660 62.4
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 6.9e-219 764.6 573 70.0
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 8.5e-217 757.7 710 58.2
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 1.3e-214 750.4 706 58.8
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 8.2e-212 741.1 542 71.2
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 5.3e-203 711.8 660 58.3
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 4.4e-197 692.2 688 57.0
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 2.4e-195 686.4 598 60.9
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.4e-190 670.6 597 61.8
SalBow6G4040 Salvia bowleyana HOM05D003901 ORTHO05D004511 6.8e-182 641.7 518 66.6
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 7.3e-168 595.1 546 59.3
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 3.2e-155 553.1 594 52.5
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 7.3e-152 542.0 673 47.5
Actinidia24200 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.8e-142 510.8 493 58.2
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 5.1e-137 492.7 743 42.5
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 5.1e-137 492.7 712 42.6
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 2.1e-135 487.3 675 43.9
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 8.1e-135 485.3 464 59.1
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 6.4e-132 475.7 657 42.9
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 1.6e-122 444.5 668 40.9
Lj2C981T10 Lonicera japonica HOM05D003901 ORTHO05D004511 2.1e-122 444.1 292 77.1
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 1.1e-112 411.8 387 58.7
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 1.0e-100 372.1 767 35.3
Dinv29460 Davidia involucrata HOM05D003901 ORTHO05D004511 5.7e-96 356.3 248 75.4
Cpa.g.sc1624.1 Carica papaya HOM05D003901 ORTHO05D004511 3.0e-89 334.0 304 60.5
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 3.4e-85 320.5 654 35.8
Actinidia37329 Actinidia chinensis HOM05D003901 ORTHO05D004511 3.2e-83 313.9 247 68.0
Dinv29461 Davidia involucrata HOM05D003901 ORTHO05D004511 3.2e-67 260.8 234 62.0
Sp5g16720 Schrenkiella parvula HOM05D003901 ORTHO05D004511 1.5e-64 251.9 215 61.4
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 7.7e-61 239.6 697 30.8
Cpa.g.c36505.3 Carica papaya HOM05D003901 ORTHO05D004511 1.9e-59 235.0 129 86.0
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 7.8e-53 213.0 667 29.1
Sp5g16710 Schrenkiella parvula HOM05D003901 ORTHO05D004511 7.8e-53 213.0 251 51.4
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 2.2e-47 194.9 709 26.2
Actinidia35457 Actinidia chinensis HOM05D003901 ORTHO05D002466 1.5e-43 182.2 381 34.9
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 2.1e-37 161.8 734 25.6
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 7.5e-32 143.3 739 24.0
Oeu058252.1 Olea europaea HOM05D003901 ORTHO05D004511 3.5e-29 134.4 112 63.4
Oeu038979.1 Olea europaea HOM05D003901 ORTHO05D004511 2.3e-28 131.7 115 60.0
Actinidia24201 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.1e-27 129.4 79 81.0
Sabra09G0112400 Salix brachista HOM05D000477 ORTHO05D000338 4.4e-24 117.5 115 54.8
Actinidia37330 Actinidia chinensis HOM05D003901 ORTHO05D004511 2.9e-23 114.8 126 53.2
Prupe.8G049500 Prunus persica HOM05D003901 ORTHO05D004511 1.1e-19 102.8 94 57.4
Lsat_1_v5_gn_2_133321 Lactuca sativa HOM05D003901 ORTHO05D004511 4.3e-19 100.9 163 43.6
Actinidia37088 Actinidia chinensis HOM05D003901 ORTHO05D004511 2.9e-15 88.2 231 32.9
unitig_0.g1482 Utricularia gibba HOM05D003901 ORTHO05D004511 4.9e-15 87.4 160 39.4
Cpa.g.sc32.110 Carica papaya HOM05D000796 ORTHO05D004511 3.2e-14 84.7 71 63.4
Cpa.g.c45307 Carica papaya HOM05D003901 ORTHO05D004511 1.2e-13 82.8 45 77.8
Manes.11G160250 Manihot esculenta HOM05D003901 ORTHO05D004511 7.8e-13 80.1 55 74.5
FAN25G0964 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.3e-12 79.3 73 58.9
Dinv20131 Davidia involucrata HOM05D000041 ORTHO05D014616 9.9e-08 63.2 37 81.1


User provided reference genes

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