Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.6e-257 889.8 445 100.0
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.7e-210 735.3 405 91.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.1e-208 729.9 410 91.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.3e-207 726.5 412 90.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.1e-207 725.7 407 91.2
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.8e-206 722.6 409 89.0
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 4.0e-206 721.5 409 88.0
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.0e-205 719.2 405 88.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 7.6e-205 717.2 409 89.0
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.0e-204 716.8 442 83.0
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.7e-204 716.1 414 89.1
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.9e-204 715.3 409 87.8
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 3.8e-204 714.9 411 87.8
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.9e-204 714.5 411 87.8
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.1e-203 713.4 409 87.8
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.4e-203 713.0 410 87.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.4e-203 713.0 405 88.6
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.9e-203 712.6 409 88.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 7.1e-203 710.7 409 88.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 9.3e-203 710.3 406 87.4
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 9.3e-203 710.3 409 88.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.2e-202 709.9 406 88.9
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 2.1e-202 709.1 407 88.5
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.7e-202 708.8 406 88.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.5e-202 708.4 409 87.8
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 7.9e-202 707.2 408 89.5
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.9e-202 707.2 409 88.3
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.0e-201 706.8 410 86.1
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.0e-201 706.8 405 87.4
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.8e-201 706.1 406 86.7
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 5.1e-201 704.5 410 86.6
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 5.1e-201 704.5 405 86.9
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.5e-200 702.2 406 86.2
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.5e-200 702.2 405 87.9
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 7.4e-200 700.7 405 86.7
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.3e-199 699.9 417 84.9
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.6e-199 699.5 417 85.1
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.2e-199 699.1 412 86.2
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.8e-199 698.7 405 85.4
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 8.2e-199 697.2 412 85.9
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.1e-198 696.8 411 84.7
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.4e-198 696.4 408 86.8
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-198 696.0 427 83.8
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.8e-198 696.0 420 85.0
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 2.4e-198 695.7 406 88.2
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.3e-198 694.5 406 87.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.9e-198 694.1 410 85.9
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 6.9e-198 694.1 410 85.9
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 9.0e-198 693.7 410 85.6
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 9.0e-198 693.7 410 86.6
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 9.0e-198 693.7 409 86.6
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-197 693.3 434 81.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.5e-197 693.0 427 82.9
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.5e-197 693.0 406 86.9
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.5e-197 693.0 405 86.2
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.0e-197 692.6 406 86.9
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.0e-197 692.6 412 84.7
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.6e-197 692.2 410 85.9
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-197 692.2 410 85.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.6e-197 692.2 406 86.9
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 5.9e-197 691.0 410 85.6
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 5.9e-197 691.0 410 85.6
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.0e-196 690.3 409 85.1
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.3e-196 689.9 409 85.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.3e-196 689.9 409 85.6
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.7e-196 689.5 412 84.0
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.9e-196 688.7 405 86.4
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.8e-196 688.3 409 85.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 5.0e-196 688.0 407 85.5
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.1e-195 686.8 410 85.1
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.1e-195 686.8 406 84.7
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.9e-195 686.0 410 84.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.9e-195 686.0 427 82.7
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.5e-195 685.6 372 90.9
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 7.2e-195 684.1 416 83.7
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.1e-194 682.6 408 83.6
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.6e-194 681.8 408 85.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 6.1e-194 681.0 414 84.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 6.1e-194 681.0 410 84.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.0e-193 678.7 407 83.3
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 5.1e-193 677.9 415 82.9
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 5.1e-193 677.9 418 81.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 8.8e-193 677.2 409 84.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.1e-192 676.8 406 85.2
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.1e-192 676.8 409 84.1
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.1e-192 676.8 409 84.1
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.1e-192 676.8 410 84.6
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.5e-192 676.4 405 83.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.0e-192 676.0 408 83.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 4.3e-192 674.9 408 84.6
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.3e-192 674.9 405 85.4
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.7e-191 672.9 401 84.0
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 6.3e-191 671.0 416 82.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.2e-191 670.6 405 83.2
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.4e-190 669.8 411 83.2
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 6.9e-190 667.5 376 88.0
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.1e-190 667.2 424 81.8
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 9.1e-190 667.2 405 84.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-189 666.8 411 82.7
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.0e-189 666.0 409 82.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 3.8e-188 661.8 407 82.6
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.8e-188 661.8 409 82.9
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.4e-187 659.8 407 83.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.5e-187 659.1 377 86.7
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.2e-187 658.7 380 86.3
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.2e-187 658.3 357 89.6
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 6.5e-180 634.4 333 92.5
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.2e-175 619.4 372 83.9
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.7e-175 618.6 349 84.2
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.1e-174 617.1 355 83.1
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.0e-172 608.2 405 76.5
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.0e-172 608.2 359 80.5
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 6.5e-172 607.8 410 77.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 6.5e-172 607.8 357 81.5
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.2e-165 587.0 319 91.5
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 5.9e-165 584.7 335 89.0
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 5.2e-161 571.6 339 84.7
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.6e-160 569.3 403 74.2
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 8.3e-151 537.7 317 85.5
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.0e-149 533.1 357 72.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.1e-146 523.1 403 70.5
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 4.4e-144 515.4 409 63.1
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.9e-140 502.3 289 84.8
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.5e-139 499.6 313 81.8
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.6e-138 496.9 345 70.7
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.1e-138 496.5 313 82.7
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 4.9e-135 485.3 292 85.6
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.6e-133 480.3 357 66.9
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-129 467.6 372 62.4
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.2e-126 456.1 248 89.1
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.6e-117 427.2 285 75.8
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.9e-116 422.5 281 77.2
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 9.3e-102 374.8 254 72.8
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.3e-99 365.9 319 62.7
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 8.0e-61 238.8 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.0e-60 238.4 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 9.4e-54 215.3 349 38.7
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.0e-49 199.1 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.0e-49 199.1 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.2e-44 183.0 104 85.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-43 180.3 103 85.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 3.4e-43 180.3 103 85.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-37 161.8 94 83.0
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.0e-35 154.5 101 78.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.9e-32 142.9 94 76.6
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.3e-31 141.7 94 80.9
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 4.0e-28 130.2 105 67.6
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.6e-27 127.5 125 57.6
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.0e-24 117.9 71 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.6e-22 109.8 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.1e-20 104.0 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-20 104.0 47 93.6
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 3.4e-19 100.5 62 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.2e-18 97.8 59 81.4
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 1.5e-14 85.1 79 67.1
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.1e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.4e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 2.5e-06 57.8 53 58.5


User provided reference genes

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